Modeller_Usage Mailing List (by date)

• Thread Index

• [modeller_usage] Modeller 10.5 release 2024/01/23
  • From: Modeller Caretaker <>
• [modeller_usage] I don't want to use one region of a *target* for construction of my model. 2024/03/12
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• [modeller_usage] Re: I don't want to use one region of a *target* for construction of my model. 2024/03/12
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• [modeller_usage] Re: I don't want to use one region of a *target* for construction of my model. 2024/03/12
  • From: Modeller Caretaker <>
• [modeller_usage] Re: I don't want to use one region of a *target* for construction of my model. 2024/03/12
  • From:
• [modeller_usage] Re: I don't want to use one region of a *target* for construction of my model. 2024/03/12
  • From: Modeller Caretaker <>
• [modeller_usage] Re: I don't want to use one region of a *target* for construction of my model. 2024/03/12
  • From:
• [modeller_usage] Error identifying new atomtypes in $RADII_LIB while adding new residue into modeller topology library 2024/03/13
  • From: "Neeraj Kumar T ." <>
• [modeller_usage] Re: Error identifying new atomtypes in $RADII_LIB while adding new residue into modeller topology library 2024/03/13
  • From: Modeller Caretaker <>
• [modeller_usage] Alignment to use when I am modelling a heteromer using a homer as template 2024/03/18
  • From:
• [modeller_usage] Re: Alignment to use when I am modelling a heteromer using a homer as template 2024/03/18
  • From: Modeller Caretaker <>
• [modeller_usage] Modelling based on two templates - one oligomer and one monomer 2024/03/19
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• [modeller_usage] Re: Modelling based on two templates - one oligomer and one monomer 2024/03/19
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• [modeller_usage] Re: Modelling based on two templates - one oligomer and one monomer 2024/03/19
  • From: Modeller Caretaker <>
• [modeller_usage] Re: Modelling based on two templates - one oligomer and one monomer 2024/03/19
  • From:
• [modeller_usage] Re: Modelling based on two templates - one oligomer and one monomer 2024/03/19
  • From: Modeller Caretaker <>
• [modeller_usage] Re: Modelling based on two templates - one oligomer and one monomer 2024/03/19
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• [modeller_usage] Re: Modelling based on two templates - one oligomer and one monomer 2024/03/19
  • From:
• [modeller_usage] Re: Error identifying new atomtypes in $RADII_LIB while adding new residue into modeller topology library 2024/03/21
  • From: "Neeraj Kumar T ." <>
• [modeller_usage] Perodic boundary condition? 2024/04/03
  • From: Qizan Chen <>
• [modeller_usage] Re: Perodic boundary condition? 2024/04/03
  • From: Modeller Caretaker <>
• [modeller_usage] Re: Perodic boundary condition? 2024/04/04
  • From: Qizan Chen <>
• [modeller_usage] About the error ( UnicodeDecodeError: 'utf-8' codec can't decode)form logger.py 2024/04/04
  • From:
• [modeller_usage] Re: Perodic boundary condition? 2024/04/05
  • From: Modeller Caretaker <>
• [modeller_usage] Re: About the error ( UnicodeDecodeError: 'utf-8' codec can't decode)form logger.py 2024/04/05
  • From: Modeller Caretaker <>
• [modeller_usage] my automodel run well serial, but molpdf is inmediatly exceeded when run in parallel 2024/04/07
  • From: Mario Bianchet <>
• [modeller_usage] Re: About the error ( UnicodeDecodeError: 'utf-8' codec can't decode)form logger.py 2024/04/07
  • From: c00jsw00 <>
• [modeller_usage] Re: About the error ( UnicodeDecodeError: 'utf-8' codec can't decode)form logger.py 2024/04/07
  • From: c00jsw00 <>
• [modeller_usage] Re: About the error ( UnicodeDecodeError: 'utf-8' codec can't decode)form logger.py 2024/04/15
  • From: Modeller Caretaker <>
• [modeller_usage] Re: About the error ( UnicodeDecodeError: 'utf-8' codec can't decode)form logger.py 2024/04/16
  • From: Modeller Caretaker <>
• [modeller_usage] Re: my automodel run well serial, but molpdf is inmediatly exceeded when run in parallel 2024/04/16
  • From: Modeller Caretaker <>
• [modeller_usage] _modeller.ModellerError: getpdf__389E> MDT table range is too small. MDT should be derived with the full range of possible values for the independent variables. 2024/04/29
  • From: Rana Rehan Khalid <>
• [modeller_usage] Re: _modeller.ModellerError: getpdf__389E> MDT table range is too small. MDT should be derived with the full range of possible values for the independent variables. 2024/05/06
  • From: Modeller Caretaker <>
• [modeller_usage] coarse parallelization 2024/05/16
  • From: Jed Goldstone <>
• [modeller_usage] Re: coarse parallelization 2024/05/16
  • From: Modeller Caretaker <>
• [modeller_usage] Missing Residues at the Start, As Well As in the Middle, of the Sequence of a Chain 2024/05/28
  • From: Siddhartha Barua <>
• [modeller_usage] Re: Missing Residues at the Start, As Well As in the Middle, of the Sequence of a Chain 2024/05/28
  • From: Joel Subach <>
• [modeller_usage] Re: Missing Residues at the Start, As Well As in the Middle, of the Sequence of a Chain 2024/05/28
  • From: Joel Subach <>
• [modeller_usage] Re: Missing Residues at the Start, As Well As in the Middle, of the Sequence of a Chain 2024/05/29
  • From: Modeller Caretaker <>
• [modeller_usage] Re: Missing Residues at the Start, As Well As in the Middle, of the Sequence of a Chain 2024/05/30
  • From: Siddhartha Barua <>
• [modeller_usage] Re: Missing Residues at the Start, As Well As in the Middle, of the Sequence of a Chain 2024/05/30
  • From: Siddhartha Barua <>
• [modeller_usage] Re: Missing Residues at the Start, As Well As in the Middle, of the Sequence of a Chain 2024/05/30
  • From: Joel Subach <>
• [modeller_usage] Building multi-chain models 2024/06/06
  • From:
• [modeller_usage] Re: Building multi-chain models 2024/06/06
  • From: Modeller Caretaker <>
• [modeller_usage] Issues with incorporating ligands in multichain protein 2024/06/14
  • From: Kyle- richard Dawson <>
• [modeller_usage] Re: Issues with incorporating ligands in multichain protein 2024/06/14
  • From: Modeller Caretaker <>
• [modeller_usage] Re: Issues with incorporating ligands in multichain protein 2024/06/17
  • From: Kyle- richard Dawson <>
• [modeller_usage] Re: Issues with incorporating ligands in multichain protein 2024/06/17
  • From: Modeller Caretaker <>
• [modeller_usage] help at second script 2024/07/23
  • From:
• [modeller_usage] help at second script 2024/07/23
  • From: FENG Junyi <>
• [modeller_usage] Re: help at second script 2024/07/23
  • From: Modeller Caretaker <>
• [modeller_usage] Using frcmod+off non-standard residue in modeller. 2024/08/15
  • From: Pedro Guillem <>
• [modeller_usage] Re: Using frcmod+off non-standard residue in modeller. 2024/08/15
  • From: Modeller Caretaker <>
• [modeller_usage] Fwd: Error in modeller 10.5 2024/09/03
  • From: Victor Eduardo Rojas Pérez <>
• [modeller_usage] Re: Fwd: Error in modeller 10.5 2024/09/04
  • From: Modeller Caretaker <>
• [modeller_usage] model different regions of a protein 2024/09/09
  • From: José Xavier <>
• [modeller_usage] Re: model different regions of a protein 2024/09/10
  • From: Modeller Caretaker <>
• [modeller_usage] Re: model different regions of a protein 2024/09/10
  • From: Joel Subach <>
• [modeller_usage] Re: model different regions of a protein 2024/09/10
  • From: José Xavier <>
• [modeller_usage] Re: model different regions of a protein 2024/09/10
  • From: Joel Subach <>
• [modeller_usage] Assunto: Re: model different regions of a protein 2024/09/10
  • From: José Xavier <>
• [modeller_usage] D-Ala 2024/10/20
  • From: Xiaosa Wu <>
• [modeller_usage] Average the models 2024/10/21
  • From: Marco Sette <>
• [modeller_usage] Re: Average the models 2024/10/21
  • From: Modeller Caretaker <>
• [modeller_usage] Modeller 10.6 release 2024/10/22
  • From: Modeller Caretaker <>
• [modeller_usage] Re: D-Ala 2024/10/22
  • From: Modeller Caretaker <>
• [modeller_usage] Fwd: Average the models 2024/10/24
  • From: Marco Sette <>
• [modeller_usage] Re: Fwd: Average the models 2024/10/24
  • From: Modeller Caretaker <>
• [modeller_usage] Missing residues modeling in Modeller 2024/11/03
  • From:
• [modeller_usage] Re: Missing residues modeling in Modeller 2024/11/04
  • From: Modeller Caretaker <>
• [modeller_usage] Reconstruction of CA position only files with all-atom template 2024/11/12
  • From: jingkaizeng <>
• [modeller_usage] Re: Reconstruction of CA position only files with all-atom template 2024/11/13
  • From: Modeller Caretaker <>