[modeller_usage] Re: model different regions of a protein
To:
Subject: [modeller_usage] Re: model different regions of a protein
From: Joel Subach <>
Date: Wed, 11 Sep 2024 07:03:35 +0200
Hi Javier your welcome and thank you for your email:).
1. Did you try Alphafold?
You have one template, try and find a second template and then model.
Feel free to inquire further if needed:).
Best,
Joel
On Wed, Sep 11, 2024 at 1:25 AM José Xavier <>
wrote:
> Dear Joel,
> Thank you for your help
>
> It's a protein with 415 amino acids and 95 are missing
>
>
>
> Em terça-feira, 10 de setembro de 2024 às 04:55:25 BRT, Joel Subach <
> > escreveu:
>
>
> Hi Jose, thank you for your inquiry and I can assist you in greater detail
> if I know how many residues in total you peptide/protein is, thanks:)
>
> On Tue, Sep 10, 2024 at 9:14 AM Modeller Caretaker via modeller_usage <
> > wrote:
>
> On 9/9/24 4:52 PM, José Xavier via modeller_usage wrote:
> > I'm new here.. so sorry if this is an already answered question.
> >
> > I want to model a protein but the better template doesn't show ~50
> > aminoácids in its sequence. Is it possible to model the protein based on
> > this template and only the region of ~50 residues based on another
> > template?
>
> Yes, this is certainly possible with a suitable alignment; see the FAQ:
> https://salilab.org/modeller/FAQ.html#1
>
> Ben Webb, Modeller Caretaker
> --
> https://salilab.org/modeller/
> Modeller mail list: https://salilab.org/mailman/listinfo/modeller_usage
>
> _______________________________________________
> modeller_usage mailing list
>
> https://salilab.org/mm/postorius/lists/modeller_usage.salilab.org/
>
>
Hi Javier your welcome and thank you for your email:).
1. Did you try Alphafold?
You have one template, try and find a second template and then model.