[modeller_usage] Re: Fwd: Error in modeller 10.5

[Modeller Caretaker <>]

On 9/3/24 10:24 AM, Victor Eduardo Rojas Pérez wrote:
> I have the following error using modeller 10.5. in linux operating 
> system. I have added the restyp RTN, retinal with % symbol in the 
> restyp.lib file in the modlib folder but I still have this error.
> What else could I do to solve this error.
...
> _modeller.ModellerError: read_al_375E> Unknown residue 
> type,position,sequence:  %      334        1

This indicates that either you did not edit the file correctly, or you 
edited the wrong file (in your case, it looks like the file you need to 
edit is /usr/lib/modeller10.5/modlib/restyp.lib).

If all you want to do is copy one or more retinal residues from your 
template structure to your target model, the easiest way to do that is 
to simply use the '.' residue in your alignment file; see
https://salilab.org/modeller/10.5/manual/node18.html

If you want to model the residue(s) flexibly, you can certainly do that 
but the procedure can be quite involved:
https://salilab.org/modeller/FAQ.html#8

	Ben Webb, Modeller Caretaker
-- 
             https://salilab.org/modeller/
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