Can the Modeller take periodic boundary conditions into account during
modeling? I aim to construct a condensed model, but currently, unwarping
the protein to the Modeller and then warping it back leads to incorrect
overlaps of side chains. I noticed that symmetry constraints can be added,
but my original system is already large, and adding additional images
causes crashes.
Can the Modeller take periodic boundary conditions into account during modeling? I aim to construct a condensed model, but currently, unwarping the protein to the Modeller and then warping it back leads to incorrect overlaps of side chains. I noticed that symmetry constraints can be added, but my original system is already large, and adding additional images causes crashes.