[modeller_usage] Re: Modelling based on two templates - one oligomer and one monomer
To:
Subject: [modeller_usage] Re: Modelling based on two templates - one oligomer and one monomer
From:
Date: Tue, 19 Mar 2024 20:22:32 +0000
Dear Ben,
Thank you very much. One last question (I'm pretty new to Modeller) about the .ali file and Python code:
* I presume that for the .ali file, the header for the AF sequences would be
>P1;temp2
structureX:temp2::A::A::::
and what would the part of the Python code that looks like:
a = automodel(env,
alnfile = 'alignment.ali' , # alignment filename
knowns = 'temp1', # codes of the templates
sequence = 'target') # code of the target
need to look like? Would there need to be a list/array for "knowns"?
With kind regards,
Amanda