[modeller_usage] Re: Modelling based on two templates - one oligomer and one monomer
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Subject: [modeller_usage] Re: Modelling based on two templates - one oligomer and one monomer
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Date: Tue, 19 Mar 2024 15:38:41 +0000
Apologies - I just found out that someone else asked basically the same question months prior:
/thread/353R467UACJSSEX2RHAO7JP76WRD26QI/">https://salilab.org/mm/hyperkitty/list//thread/353R467UACJSSEX2RHAO7JP76WRD26QI/
I presume that in the second scenario, I'd have three templates, a la:
temp1 AAAA/AAAA/BBBB/BBBB/BBBB*
temp2 aaaa/----/----/----/----*
temp3 ----/-----/bbbb/----/----*
model aaaa/aaaa/bbbb/bbbb/bbbb*
What if I am modelling with ligands? Would the following be right?
temp1 AAAA./AAAA/BBBB./BBBB/BBBB*
temp2 aaaa-/----/----/----/----*
temp3 ----/-----/bbbb-/----/----*
model aaaa./aaaa/bbbb./bbbb/bbbb*
(The .pdb files for temp2 and temp3 have no ligands. Should the ligand be indicated? If so, with a "-" or "."?)