Modeller_Usage Mailing List (by date)

• Thread Index

• [modeller_usage] Theory regarding filling of gaps 2008/02/01
  • From: "Samuel Genheden (a03samge)" <a03samge AT student.his.se>
• Re: [modeller_usage] Theory regarding filling of gaps 2008/02/01
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Antibody Modelling 2008/02/04
  • From: "selva AT pnu.edu" <eselvakumar AT yahoo.com>
• [modeller_usage] Modeller 9v3 release 2008/02/05
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Question about alignment.align() 2008/02/05
  • From: "Vadim Patsalo" <vadim AT ams.sunysb.edu>
• [modeller_usage] I'm a beginner 2008/02/11
  • From: Lella Sana <lellabella_82 AT yahoo.it>
• Re: [modeller_usage] Antibody Modelling 2008/02/11
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Question about alignment.align() 2008/02/11
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] I'm a beginner 2008/02/11
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Taking into account additional residues 2008/02/12
  • From: valeria losasso <valelos AT hotmail.it>
• [modeller_usage] Taking into account additional residues 2008/02/12
  • From: valeria losasso <valelos AT hotmail.it>
• Re: [modeller_usage] Taking into account additional residues 2008/02/13
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Antibody Modelling 2008/02/13
  • From: "selva AT pnu.edu" <eselvakumar AT yahoo.com>
• Re: [modeller_usage] Antibody Modelling 2008/02/13
  • From: "selva AT pnu.edu" <eselvakumar AT yahoo.com>
• [modeller_usage] Strange results from loop modelling 2008/02/14
  • From: "Samuel Genheden (a03samge)" <a03samge AT student.his.se>
• Re: [modeller_usage] Alignment editors? 2008/02/19
  • From: James Procter <jimp AT compbio.dundee.ac.uk>
• [modeller_usage] Some tutorial issues 2008/02/19
  • From: Michael Mayhew <mmayhew AT mcb.mcgill.ca>
• Re: [modeller_usage] Some tutorial issues 2008/02/19
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] code to generate canonical alpha-helix from sequence 2008/02/24
  • From: Yun He <jarodpardon AT gmail.com>
• Re: [modeller_usage] code to generate canonical alpha-helix from sequence 2008/02/24
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Using Fortran 90 with modeller 2008/02/25
  • From: Lee, Jinwoo <jinwoolee AT kias.re.kr>
• [modeller_usage] fuse 3-residue peptide into a protein 2008/02/25
  • From: Bingding Huang <bingding.huang AT eml-r.villa-bosch.de>
• Re: [modeller_usage] fuse 3-residue peptide into a protein 2008/02/25
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Using Fortran 90 with modeller 2008/02/25
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Improper packing 2008/02/26
  • From: jit AT mcbl.iisc.ernet.in
• [modeller_usage] loop refinement with disulfide patch 2008/02/27
  • From: "M. Seigneuret" <seigneuret AT cochin.inserm.fr>
• [modeller_usage] Need help on topology format convert (X-PLOR to CHARMM) 2008/02/27
  • From: "sui x.g." <sui_xg AT yahoo.com>
• [modeller_usage] building loops in crystal structure 2008/02/28
  • From: "Simpson, Lisa M" <lmsimp AT essex.ac.uk>
• [modeller_usage] Modelling complexes 2008/02/28
  • From: "Chido Mpamhanga" <C.P.Mpamhanga AT dundee.ac.uk>
• [modeller_usage] Using only partial information for the model 2008/02/28
  • From: Stéphane Téletchéa <stephane.teletchea AT jouy.inra.fr>
• Re: [modeller_usage] building loops in crystal structure 2008/02/28
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Modelling complexes 2008/02/28
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Using only partial information for the model 2008/02/28
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Need help on topology format convert (X-PLOR to CHARMM) 2008/02/28
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] loop refinement with disulfide patch 2008/02/28
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] parallel modeller 2008/02/28
  • From: Starr Hazard <hazards AT musc.edu>
• Re: [modeller_usage] parallel modeller 2008/02/28
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Modelling complexes 2008/02/29
  • From: "Chido Mpamhanga" <C.P.Mpamhanga AT dundee.ac.uk>
• Re: [modeller_usage] loop refinement with disulfide patch 2008/02/29
  • From: "M. Seigneuret" <seigneuret AT cochin.inserm.fr>
• Re: [modeller_usage] loop refinement with disulfide patch 2008/02/29
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] problem of strand/sheet 2008/03/02
  • From: model model <modeller314 AT yahoo.com>
• [modeller_usage] [Fwd: Modeller Objective Function] 2008/03/04
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] problem of strand/sheet 2008/03/04
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] [Fwd: Modeller Objective Function] 2008/03/04
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Modelling extra residues, not present in template 2008/03/15
  • From: Hanudatta Atreya <hsatreya AT yahoo.com>
• Re: [modeller_usage] Modelling extra residues, not present in template 2008/03/15
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] long loops modeling 2008/03/16
  • From: "Ivan Anishchenko" <anishchenko.ivan AT gmail.com>
• [modeller_usage] Error when using dope_loopmodel 2008/03/17
  • From: Florian Odronitz <flod AT nmr.mpibpc.mpg.de>
• Re: [modeller_usage] Error when using dope_loopmodel 2008/03/17
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] long loops modeling 2008/03/17
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] DOPE profile of target structure 2008/03/17
  • From: Hanudatta Atreya <hsatreya AT yahoo.com>
• Re: [modeller_usage] DOPE profile of target structure 2008/03/19
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] What are the considerations to model a cytosol protein using nuclear protein. 2008/03/20
  • From: Saravanan <biosaran2004 AT yahoo.com>
• [modeller_usage] symmetry and molecular dynamics 2008/03/28
  • From: "JEAN WATERMEYER" <JEAN.WATERMEYER AT uct.ac.za>
• Re: [modeller_usage] symmetry and molecular dynamics 2008/03/28
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] MODELLER and USER FORMAT restraints 2008/03/29
  • From: "Yingang Feng" <yingangfeng AT gmail.com>
• Re: [modeller_usage] MODELLER and USER FORMAT restraints 2008/03/29
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] inducing kink in a helix 2008/04/01
  • From: Marta Rossini <marta.rossini AT live.com>
• [modeller_usage] FW: inducing kink in a helix 2008/04/01
  • From: Marta Rossini <marta.rossini AT live.com>
• Re: [modeller_usage] inducing kink in a helix 2008/04/01
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Help 2008/04/04
  • From: matziast AT med.uth.gr
• Re: [modeller_usage] Help 2008/04/04
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Help 2008/04/04
  • From: matziast AT med.uth.gr
• Re: [modeller_usage] Help 2008/04/06
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] ALIGN_CODE 2008/04/07
  • From: barwellj AT aston.ac.uk
• Re: [modeller_usage] modeller_usage Digest, Vol 7, Issue 19 2008/04/07
  • From: "Vadim Patsalo" <vadim AT ams.sunysb.edu>
• Re: [modeller_usage] ALIGN_CODE 2008/04/07
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] modelling multiple sequences in one go 2008/04/07
  • From: "navkaranj" <navkaranj AT aib.amity.edu>
• [modeller_usage] running separate files from different folders 2008/04/07
  • From: "navkaranj" <navkaranj AT aib.amity.edu>
• [modeller_usage] Help <Traceback> 2008/04/08
  • From: matziast AT med.uth.gr
• [modeller_usage] Regarding DOPE model assessment values (Mohan) 2008/04/08
  • From: m.b.rajasekaran AT reading.ac.uk
• [modeller_usage] Trouble running superpose on subsets of multichain pdbs 2008/04/08
  • From: "Jake Gunn-Glanville" <dr.jake AT gmail.com>
• Re: [modeller_usage] Regarding DOPE model assessment values (Mohan) 2008/04/08
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] modeller_usage Digest, Vol 7, Issue 21 2008/04/08
  • From: "Vadim Patsalo" <vadim AT ams.sunysb.edu>
• Re: [modeller_usage] modelling multiple sequences in one go 2008/04/08
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Help <Traceback> 2008/04/08
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] modeller_usage Digest, Vol 7, Issue 21 2008/04/08
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Trouble running superpose on subsets of multichain pdbs 2008/04/08
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Help <exec prefix> 2008/04/09
  • From: matziast AT med.uth.gr
• Re: [modeller_usage] Help <exec prefix> 2008/04/09
  • From: "Schmid, Dr R." <rs206 AT leicester.ac.uk>
• [modeller_usage] (no subject) 2008/04/11
  • From: eashwar annipindi <eashwarbio AT yahoo.co.in>
• [modeller_usage] secondary structure restraints 2008/04/18
  • From: Marta Rossini <marta.rossini AT live.com>
• [modeller_usage] superposition based on a subset of aligned residues 2008/04/18
  • From: "Jake Gunn-Glanville" <dr.jake AT gmail.com>
• [modeller_usage] Error message: attempting superposition based on a subset of positions 2008/04/18
  • From: "Jake Gunn-Glanville" <dr.jake AT gmail.com>
• Re: [modeller_usage] Error message: attempting superposition based on a subset of positions 2008/04/18
  • From: "Jake Gunn-Glanville" <dr.jake AT gmail.com>
• [modeller_usage] Hang/crash on clustering 2008/04/27
  • From: "James Irving" <irving.james AT gmail.com>
• Re: [modeller_usage] Hang/crash on clustering 2008/04/27
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] help at first script 2008/05/05
  • From: matziast AT med.uth.gr
• Re: [modeller_usage] help at first script 2008/05/05
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Error when using dope_loopmodel 2008/05/07
  • From: Yun He <jarodpardon AT gmail.com>
• [modeller_usage] Loop Models 2008/05/07
  • From: "Gilles Truan" <gilles.truan AT cgm.cnrs-gif.fr>
• Re: [modeller_usage] Loop Models 2008/05/07
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Successful aplications of Modeller in docking studies 2008/05/07
  • From: Lucas Bleicher <lbleicher AT yahoo.com>
• [modeller_usage] help at second script 2008/05/08
  • From: matziast AT med.uth.gr
• Re: [modeller_usage] help at second script 2008/05/08
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] one question,please answer 2008/05/12
  • From: "Maryam Nikoosaleh" <nikoosaleh AT ibb.ut.ac.ir>
• [modeller_usage] one question,please answer 2008/05/12
  • From: "Maryam Nikoosaleh" <nikoosaleh AT ibb.ut.ac.ir>
• Re: [modeller_usage] one question,please answer 2008/05/12
  • From: "James Irving" <james.irving AT med.monash.edu.au>
• [modeller_usage] EM density maps for building models? 2008/05/13
  • From: Juan Chang <juan.chang AT bcm.edu>
• Re: [modeller_usage] EM density maps for building models? 2008/05/13
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Modeller 9v4 release 2008/05/15
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] multiple template model 2008/05/21
  • From: "deepti nayar" <deeptinayar AT gmail.com>
• Re: [modeller_usage] multiple template model 2008/05/22
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] modeller_usage Digest, Vol 7, Issue 30 2008/05/22
  • From: "salam pradeep" <salampradeep AT gmail.com>
• Re: [modeller_usage] modeller_usage Digest, Vol 7, Issue 30 2008/05/22
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] PDB gap fill 2008/05/23
  • From: Anna Marabotti <anna.marabotti AT isa.cnr.it>
• Re: [modeller_usage] PDB gap fill 2008/05/23
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] one question,please answer 2008/05/27
  • From: "Maryam Nikoosaleh" <nikoosaleh AT ibb.ut.ac.ir>
• [modeller_usage] Searching the PDB for sequence with structure 2008/05/28
  • From: Florian Odronitz <fodroni AT gwdg.de>
• [modeller_usage] how add sidechains 2008/05/28
  • From: matziast AT med.uth.gr
• Re: [modeller_usage] Searching the PDB for sequence with structure 2008/05/28
  • From: Florian Odronitz <fodroni AT gwdg.de>
• Re: [modeller_usage] Searching the PDB for sequence with structure 2008/05/28
  • From: Jacob Glanville <dr.jake AT gmail.com>
• Re: [modeller_usage] Searching the PDB for sequence with structure 2008/05/28
  • From: Mensur Dlakic <mdlakic AT montana.edu>
• Re: [modeller_usage] how add sidechains 2008/05/28
  • From: Mensur Dlakic <mdlakic AT montana.edu>
• Re: [modeller_usage] how add sidechains 2008/05/28
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Searching the PDB for sequence with structure 2008/05/28
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Post - problem with modelling a chain using another chain as template 2008/05/29
  • From: plmallip AT mail.uh.edu
• Re: [modeller_usage] Post - problem with modelling a chain using another chain as template 2008/05/29
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] multiple templates 2008/05/30
  • From: Petr Danecek <petr.danecek AT utmb.edu>
• Re: [modeller_usage] multiple templates 2008/05/30
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] PIR format clarification 2008/06/01
  • From: "Thomas Juettemann" <juettemann AT gmail.com>
• Re: [modeller_usage] PIR format clarification 2008/06/01
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] PIR format clarification 2008/06/01
  • From: "Thomas Juettemann" <juettemann AT gmail.com>
• [modeller_usage] Problem with running Flex-em 2008/06/13
  • From: "Hua Li" <huali2000 AT gmail.com>
• Re: [modeller_usage] Problem with running Flex-em 2008/06/13
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Parallel job 2008/06/17
  • From: Francesco Musiani <francesco.musiani AT unibo.it>
• Re: [modeller_usage] Parallel job 2008/06/17
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Parallel job (part 2) 2008/06/17
  • From: "Francesco Musiani" <francesco.musiani AT unibo.it>
• Re: [modeller_usage] Parallel job (part 2) 2008/06/17
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] question about mutate_model 2008/06/30
  • From: Anna Marabotti <anna.marabotti AT isa.cnr.it>
• Re: [modeller_usage] question about mutate_model 2008/06/30
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] restraint check 2008/07/01
  • From: Ryan <pavlovicz.7 AT osu.edu>
• [modeller_usage] non-proline cis-peptide bonds 2008/07/01
  • From: François Sampieri <francois.sampieri AT wanadoo.fr>
• Re: [modeller_usage] non-proline cis-peptide bonds 2008/07/01
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] restraint check 2008/07/01
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] GA341 assessment 2008/07/02
  • From: Lella Sana <lellabella_82 AT yahoo.it>
• Re: [modeller_usage] GA341 assessment 2008/07/02
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] symmetric hexamer 2008/07/16
  • From: o.h.weiergraeber AT fz-juelich.de
• [modeller_usage] naming chains in pdb 2008/07/16
  • From: "Abdul Hameed, MohamedDiwanMo" <mabdu3 AT email.uky.edu>
• Re: [modeller_usage] symmetric hexamer 2008/07/16
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] naming chains in pdb 2008/07/16
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] a question on MODELLER usage 2008/07/17
  • From: "Ivan Anishchenko" <anishchenko.ivan AT gmail.com>
• Re: [modeller_usage] a question on MODELLER usage 2008/07/17
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Installation on Debian Linux 2008/07/22
  • From: "Francesco Pietra" <chiendarret AT gmail.com>
• [modeller_usage] Fwd: Installation on Debian Linux 2008/07/22
  • From: "刘君" <snailliujun AT gmail.com>
• [modeller_usage] Fwd: a question on MODELLER usage 2008/07/22
  • From: "刘君" <snailliujun AT gmail.com>
• [modeller_usage] Fwd: The results of your email commands 2008/07/22
  • From: "刘君" <snailliujun AT gmail.com>
• [modeller_usage] doutbs about file 2008/07/22
  • From: Amanda Moraes <maia.amanda AT yahoo.com.br>
• Re: [modeller_usage] doutbs about file 2008/07/22
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] another doutbs about file 2008/07/24
  • From: Amanda Moraes <maia.amanda AT yahoo.com.br>
• Re: [modeller_usage] another doutbs about file 2008/07/24
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Mismatch alignment-pdb 2008/07/24
  • From: "Francesco Pietra" <chiendarret AT gmail.com>
• Re: [modeller_usage] Mismatch alignment-pdb 2008/07/24
  • From: "Francesco Pietra" <chiendarret AT gmail.com>
• Re: [modeller_usage] Mismatch alignment-pdb 2008/07/24
  • From: "Francesco Pietra" <chiendarret AT gmail.com>
• Re: [modeller_usage] Mismatch alignment-pdb 2008/07/24
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Editing pdb file for a multimer 2008/07/26
  • From: "Francesco Pietra" <chiendarret AT gmail.com>
• [modeller_usage] Appending model pdb files 2008/07/27
  • From: "Francesco Pietra" <chiendarret AT gmail.com>
• [modeller_usage] working & accuracy of modeller 2008/07/27
  • From: rsachdeva AT imtech.res.in
• Re: [modeller_usage] working & accuracy of modeller 2008/07/28
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Oligomer Modelling 2008/07/29
  • From: Manjunatha Karpenahalli <manju_88 AT yahoo.com>
• Re: [modeller_usage] Oligomer Modelling 2008/07/29
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Editing pdb file for a multimer 2008/07/29
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Appending model pdb files 2008/07/29
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Simple modeling with ligand 2008/07/30
  • From: "Francesco Pietra" <chiendarret AT gmail.com>
• Re: [modeller_usage] Simple modeling with ligand 2008/07/30
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] build_profile.log? 2008/07/31
  • From: Μαρία Τζιαστούδη <matziast AT med.uth.gr>
• Re: [modeller_usage] build_profile.log? 2008/07/31
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Oligomer Modelling 2008/07/31
  • From: Manjunatha Karpenahalli <manju_88 AT yahoo.com>
• Re: [modeller_usage] Oligomer Modelling 2008/07/31
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] new to modeller 2008/08/02
  • From: Chinwe Ekenna <chiekenna AT yahoo.com>
• Re: [modeller_usage] new to modeller 2008/08/02
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] modeling an oligomer 2008/08/06
  • From: Douglas Kojetin <douglas.kojetin AT gmail.com>
• Re: [modeller_usage] modeling an oligomer 2008/08/07
  • From: Douglas Kojetin <douglas.kojetin AT gmail.com>
• [modeller_usage] GPCR modeling 2008/08/07
  • From: "Sharangdhar S. Phatak" <Sharangdhar.S.Phatak AT uth.tmc.edu>
• Re: [modeller_usage] modeling an oligomer 2008/08/07
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] side chains turned inside out 2008/08/08
  • From: "Josmar R. da Rocha" <bije_br AT yahoo.com.br>
• [modeller_usage] question about a mix model 2008/08/08
  • From: Jesica MLM <jesijem AT yahoo.com.ar>
• Re: [modeller_usage] question about a mix model 2008/08/08
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] side chains turned inside out 2008/08/08
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] using modeller to refine a docking conformation 2008/08/14
  • From: "Jake Gunn-Glanville" <dr.jake AT gmail.com>
• Re: [modeller_usage] using modeller to refine a docking conformation 2008/08/14
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] problem with model-multiple-hetero.py 2008/08/15
  • From: "sanjay singh" <sanjay_singh765 AT rediffmail.com>
• Re: [modeller_usage] problem with model-multiple-hetero.py 2008/08/15
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] problem with ligand modelling 2008/08/18
  • From: "sanjay singh" <sanjay_singh765 AT rediffmail.com>
• [modeller_usage] Rino Ragno è fuori ufficio/ is out of office 2008/08/18
  • From: Rino.Ragno AT uniroma1.it
• [modeller_usage] Rino Ragno è fuori ufficio/ is out of office 2008/08/18
  • From: Rino.Ragno AT uniroma1.it
• Re: [modeller_usage] problem with ligand modelling 2008/08/18
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] modeller_usage Digest, Vol 7, Issue 54 2008/08/19
  • From: "sanjay singh" <sanjay_singh765 AT rediffmail.com>
• Re: [modeller_usage] modeller_usage Digest, Vol 7, Issue 54 2008/08/19
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] modeller_usage Digest, Vol 7, Issue 56 2008/08/20
  • From: "salam pradeep" <salampradeep AT gmail.com>
• Re: [modeller_usage] modeller_usage Digest, Vol 7, Issue 56 2008/08/20
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Chaining models 2008/08/21
  • From: Stéphane Téletchéa <stephane.teletchea AT jouy.inra.fr>
• Re: [modeller_usage] Chaining models 2008/08/21
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] protein-dna complex modeling 2008/08/21
  • From: "prasun kumar" <prasun30 AT gmail.com>
• Re: [modeller_usage] protein-dna complex modeling 2008/08/21
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] modeller_usage Digest, Vol 7, Issue 58 2008/08/28
  • From: "salam pradeep" <salampradeep AT gmail.com>
• [modeller_usage] 'import site' failed; use -v for traceback 2008/09/02
  • From: DimitryASuplatov <genesup AT gmail.com>
• Re: [modeller_usage] 'import site' failed; use -v for traceback 2008/09/02
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] objective function 2008/09/03
  • From: Amanda Moraes <maia.amanda AT yahoo.com.br>
• [modeller_usage] how to fix some residues not lying in allowed regions of Ramachandran plot 2008/09/03
  • From: rsachdeva AT imtech.res.in
• Re: [modeller_usage] how to fix some residues not lying in allowed regions of Ramachandran plot 2008/09/03
  • From: mon_sharma AT research.iiit.ac.in
• [modeller_usage] (My) problems with BLK 2008/09/06
  • From: "Francesco Pietra" <chiendarret AT gmail.com>
• [modeller_usage] Fwd: (My) problems with BLK 2008/09/07
  • From: "Francesco Pietra" <chiendarret AT gmail.com>
• [modeller_usage] Fwd: (My) problems with BLK 2008/09/07
  • From: "Francesco Pietra" <chiendarret AT gmail.com>
• Re: [modeller_usage] how to fix some residues not lying in allowed regions of Ramachandran plot 2008/09/07
  • From: Frederico Arnoldi <fredgca AT hotmail.com>
• Re: [modeller_usage] (My) problems with BLK 2008/09/08
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] CHARMM atom type is not recognized (not in RADII_LIB): 15.999 2008/09/08
  • From: "Wang Yanli" <niuniu6 AT gmail.com>
• Re: [modeller_usage] CHARMM atom type is not recognized (not in RADII_LIB): 15.999 2008/09/09
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] from ylwang: loop conformation sampling 2008/09/10
  • From: "Wang Yanli" <niuniu6 AT gmail.com>
• [modeller_usage] How to introduce a covalent bond in a model? 2008/09/19
  • From: DimitryASuplatov <genesup AT gmail.com>
• [modeller_usage] how to constrain automodel to remain closer to the template 2008/09/19
  • From: "Jake Gunn-Glanville" <dr.jake AT gmail.com>
• Re: [modeller_usage] How to introduce a covalent bond in a model? 2008/09/19
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] how to constrain automodel to remain closer to the template 2008/09/19
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] from ylwang: loop conformation sampling 2008/09/19
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] clockwise pentamer to anticlockwise model 2008/09/19
  • From: plmallip AT mail.uh.edu
• [modeller_usage] W> MODEL atom not classified: GLY:OXT GLY 2008/09/24
  • From: "Joaquim Rui Rodrigues" <joaquim.rodrigues AT estg.ipleiria.pt>
• Re: [modeller_usage] W> MODEL atom not classified: GLY:OXT GLY 2008/09/24
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Cluster PDBs 2008/09/27
  • From: "Wang Yanli" <niuniu6 AT gmail.com>
• Re: [modeller_usage] Need help in not modeling the propep feature in final model 2008/09/29
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Cluster PDBs 2008/09/29
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] clockwise pentamer to anticlockwise model 2008/09/29
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Modelling an oligomer 2008/10/04
  • From: Lucas Bleicher <lbleicher AT yahoo.com>
• [modeller_usage] PCA problem 2008/10/06
  • From: Julien Pele <musashi49000 AT yahoo.fr>
• [modeller_usage] Is there anything wrong with my configuration file?My models look so strange 2008/10/06
  • From: "wayj86 wayj86" <wayj86 AT gmail.com>
• [modeller_usage] radii.lib 2008/10/09
  • From: "Joaquim Rui Rodrigues" <joaquim.rodrigues AT estg.ipleiria.pt>
• Re: [modeller_usage] radii.lib 2008/10/09
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Is there anything wrong with my configuration file?My models look so strange 2008/10/09
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Using of a template with the coordinates of the Calpha atoms only. 2008/10/14
  • From: Jean-Paul Becker <jpbecker AT ulb.ac.be>
• Re: [modeller_usage] Using of a template with the coordinates of the Calpha atoms only. 2008/10/16
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Modeller 9v5 release 2008/10/16
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Modelling an oligomer 2008/10/17
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] keeping original residue numbers in final model 2008/10/22
  • From: "Mauricio Carrillo Tripp" <trippm AT scripps.edu>
• [modeller_usage] adding two proteins 2008/10/24
  • From: "prasun kumar" <prasun30 AT gmail.com>
• [modeller_usage] dopehr_loopmodel crashed 2008/10/24
  • From: "Mauricio Carrillo Tripp" <trippm AT scripps.edu>
• [modeller_usage] automodel vs loopmodel 2008/10/24
  • From: "Mauricio Carrillo Tripp" <trippm AT scripps.edu>
• [modeller_usage] adding two residues of different peptides 2008/10/25
  • From: "prasun kumar" <prasun30 AT gmail.com>
• [modeller_usage] to build ions 2008/10/28
  • From: vidhya ganesh <vidhya_81in AT yahoo.com>
• [modeller_usage] How to change directory path for atom files 2008/10/28
  • From: "khuram sb" <khuramsb AT gmail.com>
• [modeller_usage] modeling of phosphorylated polypeptide 2008/10/29
  • From: Xiao-Ping Zhang <xpzhang AT ucdavis.edu>
• [modeller_usage] interpolating missing residues 2008/10/30
  • From: BIN ZHANG <zhngbn AT gmail.com>
• Re: [modeller_usage] modeling of phosphorylated polypeptide 2008/10/31
  • From: Xiao-Ping Zhang <xpzhang AT ucdavis.edu>
• Re: [modeller_usage] modeling of phosphorylated polypeptide 2008/10/31
  • From: "Dibyabhaba Pradhan" <dbpinfo AT gmail.com>
• [modeller_usage] mutate script from modeller site 2008/11/01
  • From: DimitryASuplatov <genesup AT gmail.com>
• [modeller_usage] Heme 2008/11/03
  • From: Bo Yang <n62star AT yahoo.com>
• Re: [modeller_usage] Heme 2008/11/04
  • From: Bo Yang <n62star AT yahoo.com>
• Re: [modeller_usage] Heme 2008/11/04
  • From: Robert Campbell <robert.campbell AT queensu.ca>
• [modeller_usage] Building a tetramer 2008/11/10
  • From: Nicky Thrupp <nixt55 AT yahoo.co.uk>
• [modeller_usage] Help 2008/11/10
  • From: nagaraju ngaraju <rajalvusyou AT yahoo.co.in>
• [modeller_usage] template alignment challenge 2008/11/11
  • From: Chinwe Ekenna <chiekenna AT yahoo.com>
• Re: [modeller_usage] Help 2008/11/11
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Building a tetramer 2008/11/11
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] How to change directory path for atom files 2008/11/11
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] mutate script from modeller site 2008/11/11
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] template alignment challenge 2008/11/11
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] to build ions 2008/11/11
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] keeping original residue numbers in final model 2008/11/11
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] adding two proteins 2008/11/11
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Error massage 2008/11/11
  • From: nagaraju ngaraju <rajalvusyou AT yahoo.co.in>
• Re: [modeller_usage] Error massage 2008/11/11
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] adding two residues of different peptides 2008/11/11
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] automodel vs loopmodel 2008/11/11
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] interpolating missing residues 2008/11/11
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] modeling of phosphorylated polypeptide 2008/11/11
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] modeling of phosphorylated polypeptide 2008/11/11
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] How to install pylab in modeller? 2008/11/12
  • From: vidhya ganesh <vidhya_81in AT yahoo.com>
• Re: [modeller_usage] modeller_why ther is know gui. 2008/11/12
  • From: Jayashankar <s.jayashankar AT gmail.com>
• Re: [modeller_usage] modeller_why ther is know gui. 2008/11/12
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] How to install pylab in modeller? 2008/11/12
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Heme 2008/11/12
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] model a peptide without moving a part of it 2008/11/14
  • From: "Omar Piña" <pibe05 AT gmail.com>
• Re: [modeller_usage] model a peptide without moving a part of it 2008/11/14
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Visuvalise 2008/11/14
  • From: nagaraju ngaraju <rajalvusyou AT yahoo.co.in>
• Re: [modeller_usage] Visuvalise 2008/11/17
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] dopehr_loopmodel crashed 2008/11/17
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] dopehr_loopmodel crashed 2008/11/17
  • From: "Mauricio Carrillo Tripp" <trippm AT scripps.edu>
• Re: [modeller_usage] dopehr_loopmodel crashed 2008/11/17
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Loop model refinement level 2008/11/17
  • From: "Mauricio Carrillo Tripp" <trippm AT scripps.edu>
• Re: [modeller_usage] Loop model refinement level 2008/11/17
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] normalized DOPE - expected values vs quality of template? 2008/11/20
  • From: Daniel Rigden <drigden AT liverpool.ac.uk>
• [modeller_usage] question for a (putative?) disulfide bridge 2008/11/20
  • From: Anna Marabotti <anna.marabotti AT isa.cnr.it>
• Re: [modeller_usage] question for a (putative?) disulfide bridge 2008/11/20
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] R: question for a (putative?) disulfide bridge 2008/11/21
  • From: Anna Marabotti <anna.marabotti AT isa.cnr.it>
• Re: [modeller_usage] R: question for a (putative?) disulfide bridge 2008/11/21
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] Transfer_xyz or other methods? 2008/11/23
  • From: plmallip AT mail.uh.edu
• [modeller_usage] how to build a model from a template with only CA atoms? 2008/11/25
  • From: "Lixia Jin Day" <ljin12 AT asu.edu>
• Re: [modeller_usage] how to build a model from a template with only CA atoms? 2008/11/25
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] R: R: question for a (putative?) disulfide bridge 2008/11/26
  • From: Anna Marabotti <anna.marabotti AT isa.cnr.it>
• [modeller_usage] dope batch processing 2008/11/26
  • From: "jinlian" <jinlian05 AT lzu.cn>
• [modeller_usage] Residues in disallowed region 2008/11/27
  • From: Bo Yang <n62star AT yahoo.com>
• [modeller_usage] dope batch processing 2008/11/28
  • From: "Mauricio Carrillo Tripp" <trippm AT scripps.edu>
• Re: [modeller_usage] dope batch processing 2008/12/01
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Transfer_xyz or other methods? 2008/12/01
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Residues in disallowed region 2008/12/01
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] manual restaints in muultiple template modeling? 2008/12/01
  • From: plmallip AT mail.uh.edu
• [modeller_usage] Atom has GB/SA radius 0.0000. 2008/12/02
  • From: "Joaquim Rui Rodrigues" <joaquim.rodrigues AT estg.ipleiria.pt>
• Re: [modeller_usage] Transfer_xyz or other methods? 2008/12/02
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] Atom has GB/SA radius 0.0000. 2008/12/02
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] manual restaints in muultiple template modeling? 2008/12/02
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] R: R: question for a (putative?) disulfide bridge 2008/12/02
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] import errors 2008/12/04
  • From: "Mauricio Carrillo Tripp" <trippm AT scripps.edu>
• Re: [modeller_usage] import errors 2008/12/04
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] import errors 2008/12/04
  • From: "Mauricio Carrillo Tripp" <trippm AT scripps.edu>
• Re: [modeller_usage] import errors 2008/12/04
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] import errors 2008/12/05
  • From: "Mauricio Carrillo Tripp" <trippm AT scripps.edu>
• Re: [modeller_usage] import errors 2008/12/05
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] import errors 2008/12/05
  • From: "Mauricio Carrillo Tripp" <trippm AT scripps.edu>
• Re: [modeller_usage] parallel modeller 2008/12/07
  • From: "Mauricio Carrillo Tripp" <trippm AT scripps.edu>
• Re: [modeller_usage] import errors 2008/12/08
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] parallel modeller 2008/12/08
  • From: "Mauricio Carrillo Tripp" <trippm AT scripps.edu>
• Re: [modeller_usage] parallel modeller 2008/12/08
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] import errors 2008/12/08
  • From: "Mauricio Carrillo Tripp" <trippm AT scripps.edu>
• [modeller_usage] Multicore Jobs on QB3 Cluster Nodes 2008/12/08
  • From: Albion Baucom <baucom AT msg.ucsf.edu>
• Re: [modeller_usage] Multicore Jobs on QB3 Cluster Nodes 2008/12/08
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• Re: [modeller_usage] import errors 2008/12/09
  • From: Modeller Caretaker <modeller-care@ucsf.edu>
• [modeller_usage] POSITION IONS IN MODELS 2008/12/11
  • From: Lella Sana <lellabella_82 AT yahoo.it>
• Re: [modeller_usage] POSITION IONS IN MODELS 2008/12/11
  • From: Modeller Caretaker <modeller-care@ucsf.edu>