Modeller_Usage Mailing List (by date)

Thread Index

[modeller_usage] Theory regarding filling of gaps 2008/02/01
- From: "Samuel Genheden (a03samge)" <>
Re: [modeller_usage] Theory regarding filling of gaps 2008/02/01
- From: Modeller Caretaker <>
[modeller_usage] Antibody Modelling 2008/02/04
- From: "" <>
[modeller_usage] Modeller 9v3 release 2008/02/05
- From: Modeller Caretaker <>
[modeller_usage] Question about alignment.align() 2008/02/05
- From: "Vadim Patsalo" <>
[modeller_usage] I'm a beginner 2008/02/11
- From: Lella Sana <>
Re: [modeller_usage] Antibody Modelling 2008/02/11
- From: Modeller Caretaker <>
Re: [modeller_usage] Question about alignment.align() 2008/02/11
- From: Modeller Caretaker <>
Re: [modeller_usage] I'm a beginner 2008/02/11
- From: Modeller Caretaker <>
[modeller_usage] Taking into account additional residues 2008/02/12
- From: valeria losasso <>
[modeller_usage] Taking into account additional residues 2008/02/12
- From: valeria losasso <>
Re: [modeller_usage] Taking into account additional residues 2008/02/13
- From: Modeller Caretaker <>
Re: [modeller_usage] Antibody Modelling 2008/02/13
- From: "" <>
Re: [modeller_usage] Antibody Modelling 2008/02/13
- From: "" <>
[modeller_usage] Strange results from loop modelling 2008/02/14
- From: "Samuel Genheden (a03samge)" <>
Re: [modeller_usage] Alignment editors? 2008/02/19
- From: James Procter <>
[modeller_usage] Some tutorial issues 2008/02/19
- From: Michael Mayhew <>
Re: [modeller_usage] Some tutorial issues 2008/02/19
- From: Modeller Caretaker <>
[modeller_usage] code to generate canonical alpha-helix from sequence 2008/02/24
- From: Yun He <>
Re: [modeller_usage] code to generate canonical alpha-helix from sequence 2008/02/24
- From: Modeller Caretaker <>
[modeller_usage] Using Fortran 90 with modeller 2008/02/25
- From: Lee, Jinwoo <>
[modeller_usage] fuse 3-residue peptide into a protein 2008/02/25
- From: Bingding Huang <>
Re: [modeller_usage] fuse 3-residue peptide into a protein 2008/02/25
- From: Modeller Caretaker <>
Re: [modeller_usage] Using Fortran 90 with modeller 2008/02/25
- From: Modeller Caretaker <>
[modeller_usage] Improper packing 2008/02/26
- From:
[modeller_usage] loop refinement with disulfide patch 2008/02/27
- From: "M. Seigneuret" <>
[modeller_usage] Need help on topology format convert (X-PLOR to CHARMM) 2008/02/27
- From: "sui x.g." <>
[modeller_usage] building loops in crystal structure 2008/02/28
- From: "Simpson, Lisa M" <>
[modeller_usage] Modelling complexes 2008/02/28
- From: "Chido Mpamhanga" <>
[modeller_usage] Using only partial information for the model 2008/02/28
- From: Stéphane Téletchéa <>
Re: [modeller_usage] building loops in crystal structure 2008/02/28
- From: Modeller Caretaker <>
Re: [modeller_usage] Modelling complexes 2008/02/28
- From: Modeller Caretaker <>
Re: [modeller_usage] Using only partial information for the model 2008/02/28
- From: Modeller Caretaker <>
Re: [modeller_usage] Need help on topology format convert (X-PLOR to CHARMM) 2008/02/28
- From: Modeller Caretaker <>
Re: [modeller_usage] loop refinement with disulfide patch 2008/02/28
- From: Modeller Caretaker <>
[modeller_usage] parallel modeller 2008/02/28
- From: Starr Hazard <>
Re: [modeller_usage] parallel modeller 2008/02/28
- From: Modeller Caretaker <>
[modeller_usage] Modelling complexes 2008/02/29
- From: "Chido Mpamhanga" <>
Re: [modeller_usage] loop refinement with disulfide patch 2008/02/29
- From: "M. Seigneuret" <>
Re: [modeller_usage] loop refinement with disulfide patch 2008/02/29
- From: Modeller Caretaker <>
[modeller_usage] problem of strand/sheet 2008/03/02
- From: model model <>
[modeller_usage] [Fwd: Modeller Objective Function] 2008/03/04
- From: Modeller Caretaker <>
Re: [modeller_usage] problem of strand/sheet 2008/03/04
- From: Modeller Caretaker <>
Re: [modeller_usage] [Fwd: Modeller Objective Function] 2008/03/04
- From: Modeller Caretaker <>
[modeller_usage] Modelling extra residues, not present in template 2008/03/15
- From: Hanudatta Atreya <>
Re: [modeller_usage] Modelling extra residues, not present in template 2008/03/15
- From: Modeller Caretaker <>
[modeller_usage] long loops modeling 2008/03/16
- From: "Ivan Anishchenko" <>
[modeller_usage] Error when using dope_loopmodel 2008/03/17
- From: Florian Odronitz <>
Re: [modeller_usage] Error when using dope_loopmodel 2008/03/17
- From: Modeller Caretaker <>
Re: [modeller_usage] long loops modeling 2008/03/17
- From: Modeller Caretaker <>
[modeller_usage] DOPE profile of target structure 2008/03/17
- From: Hanudatta Atreya <>
Re: [modeller_usage] DOPE profile of target structure 2008/03/19
- From: Modeller Caretaker <>
[modeller_usage] What are the considerations to model a cytosol protein using nuclear protein. 2008/03/20
- From: Saravanan <>
[modeller_usage] symmetry and molecular dynamics 2008/03/28
- From: "JEAN WATERMEYER" <>
Re: [modeller_usage] symmetry and molecular dynamics 2008/03/28
- From: Modeller Caretaker <>
[modeller_usage] MODELLER and USER FORMAT restraints 2008/03/29
- From: "Yingang Feng" <>
Re: [modeller_usage] MODELLER and USER FORMAT restraints 2008/03/29
- From: Modeller Caretaker <>
[modeller_usage] inducing kink in a helix 2008/04/01
- From: Marta Rossini <>
[modeller_usage] FW: inducing kink in a helix 2008/04/01
- From: Marta Rossini <>
Re: [modeller_usage] inducing kink in a helix 2008/04/01
- From: Modeller Caretaker <>
[modeller_usage] Help 2008/04/04
- From:
Re: [modeller_usage] Help 2008/04/04
- From: Modeller Caretaker <>
[modeller_usage] Help 2008/04/04
- From:
Re: [modeller_usage] Help 2008/04/06
- From: Modeller Caretaker <>
[modeller_usage] ALIGN_CODE 2008/04/07
- From:
Re: [modeller_usage] modeller_usage Digest, Vol 7, Issue 19 2008/04/07
- From: "Vadim Patsalo" <>
Re: [modeller_usage] ALIGN_CODE 2008/04/07
- From: Modeller Caretaker <>
[modeller_usage] modelling multiple sequences in one go 2008/04/07
- From: "navkaranj" <>
[modeller_usage] running separate files from different folders 2008/04/07
- From: "navkaranj" <>
[modeller_usage] Help <Traceback> 2008/04/08
- From:
[modeller_usage] Regarding DOPE model assessment values (Mohan) 2008/04/08
- From:
[modeller_usage] Trouble running superpose on subsets of multichain pdbs 2008/04/08
- From: "Jake Gunn-Glanville" <>
Re: [modeller_usage] Regarding DOPE model assessment values (Mohan) 2008/04/08
- From: Modeller Caretaker <>
Re: [modeller_usage] modeller_usage Digest, Vol 7, Issue 21 2008/04/08
- From: "Vadim Patsalo" <>
Re: [modeller_usage] modelling multiple sequences in one go 2008/04/08
- From: Modeller Caretaker <>
Re: [modeller_usage] Help <Traceback> 2008/04/08
- From: Modeller Caretaker <>
Re: [modeller_usage] modeller_usage Digest, Vol 7, Issue 21 2008/04/08
- From: Modeller Caretaker <>
Re: [modeller_usage] Trouble running superpose on subsets of multichain pdbs 2008/04/08
- From: Modeller Caretaker <>
[modeller_usage] Help <exec prefix> 2008/04/09
- From:
Re: [modeller_usage] Help <exec prefix> 2008/04/09
- From: "Schmid, Dr R." <>
[modeller_usage] (no subject) 2008/04/11
- From: eashwar annipindi <>
[modeller_usage] secondary structure restraints 2008/04/18
- From: Marta Rossini <>
[modeller_usage] superposition based on a subset of aligned residues 2008/04/18
- From: "Jake Gunn-Glanville" <>
[modeller_usage] Error message: attempting superposition based on a subset of positions 2008/04/18
- From: "Jake Gunn-Glanville" <>
Re: [modeller_usage] Error message: attempting superposition based on a subset of positions 2008/04/18
- From: "Jake Gunn-Glanville" <>
[modeller_usage] Hang/crash on clustering 2008/04/27
- From: "James Irving" <>
Re: [modeller_usage] Hang/crash on clustering 2008/04/27
- From: Modeller Caretaker <>
[modeller_usage] help at first script 2008/05/05
- From:
Re: [modeller_usage] help at first script 2008/05/05
- From: Modeller Caretaker <>
Re: [modeller_usage] Error when using dope_loopmodel 2008/05/07
- From: Yun He <>
[modeller_usage] Loop Models 2008/05/07
- From: "Gilles Truan" <>
Re: [modeller_usage] Loop Models 2008/05/07
- From: Modeller Caretaker <>
[modeller_usage] Successful aplications of Modeller in docking studies 2008/05/07
- From: Lucas Bleicher <>
[modeller_usage] help at second script 2008/05/08
- From:
Re: [modeller_usage] help at second script 2008/05/08
- From: Modeller Caretaker <>
[modeller_usage] one question,please answer 2008/05/12
- From: "Maryam Nikoosaleh" <>
[modeller_usage] one question,please answer 2008/05/12
- From: "Maryam Nikoosaleh" <>
Re: [modeller_usage] one question,please answer 2008/05/12
- From: "James Irving" <>
[modeller_usage] EM density maps for building models? 2008/05/13
- From: Juan Chang <>
Re: [modeller_usage] EM density maps for building models? 2008/05/13
- From: Modeller Caretaker <>
[modeller_usage] Modeller 9v4 release 2008/05/15
- From: Modeller Caretaker <>
[modeller_usage] multiple template model 2008/05/21
- From: "deepti nayar" <>
Re: [modeller_usage] multiple template model 2008/05/22
- From: Modeller Caretaker <>
Re: [modeller_usage] modeller_usage Digest, Vol 7, Issue 30 2008/05/22
- From: "salam pradeep" <>
Re: [modeller_usage] modeller_usage Digest, Vol 7, Issue 30 2008/05/22
- From: Modeller Caretaker <>
[modeller_usage] PDB gap fill 2008/05/23
- From: Anna Marabotti <>
Re: [modeller_usage] PDB gap fill 2008/05/23
- From: Modeller Caretaker <>
[modeller_usage] one question,please answer 2008/05/27
- From: "Maryam Nikoosaleh" <>
[modeller_usage] Searching the PDB for sequence with structure 2008/05/28
- From: Florian Odronitz <>
[modeller_usage] how add sidechains 2008/05/28
- From:
Re: [modeller_usage] Searching the PDB for sequence with structure 2008/05/28
- From: Florian Odronitz <>
Re: [modeller_usage] Searching the PDB for sequence with structure 2008/05/28
- From: Jacob Glanville <>
Re: [modeller_usage] Searching the PDB for sequence with structure 2008/05/28
- From: Mensur Dlakic <>
Re: [modeller_usage] how add sidechains 2008/05/28
- From: Mensur Dlakic <>
Re: [modeller_usage] how add sidechains 2008/05/28
- From: Modeller Caretaker <>
Re: [modeller_usage] Searching the PDB for sequence with structure 2008/05/28
- From: Modeller Caretaker <>
[modeller_usage] Post - problem with modelling a chain using another chain as template 2008/05/29
- From:
Re: [modeller_usage] Post - problem with modelling a chain using another chain as template 2008/05/29
- From: Modeller Caretaker <>
[modeller_usage] multiple templates 2008/05/30
- From: Petr Danecek <>
Re: [modeller_usage] multiple templates 2008/05/30
- From: Modeller Caretaker <>
[modeller_usage] PIR format clarification 2008/06/01
- From: "Thomas Juettemann" <>
Re: [modeller_usage] PIR format clarification 2008/06/01
- From: Modeller Caretaker <>
Re: [modeller_usage] PIR format clarification 2008/06/01
- From: "Thomas Juettemann" <>
[modeller_usage] Problem with running Flex-em 2008/06/13
- From: "Hua Li" <>
Re: [modeller_usage] Problem with running Flex-em 2008/06/13
- From: Modeller Caretaker <>
[modeller_usage] Parallel job 2008/06/17
- From: Francesco Musiani <>
Re: [modeller_usage] Parallel job 2008/06/17
- From: Modeller Caretaker <>
[modeller_usage] Parallel job (part 2) 2008/06/17
- From: "Francesco Musiani" <>
Re: [modeller_usage] Parallel job (part 2) 2008/06/17
- From: Modeller Caretaker <>
[modeller_usage] question about mutate_model 2008/06/30
- From: Anna Marabotti <>
Re: [modeller_usage] question about mutate_model 2008/06/30
- From: Modeller Caretaker <>
[modeller_usage] restraint check 2008/07/01
- From: Ryan <>
[modeller_usage] non-proline cis-peptide bonds 2008/07/01
- From: François Sampieri <>
Re: [modeller_usage] non-proline cis-peptide bonds 2008/07/01
- From: Modeller Caretaker <>
Re: [modeller_usage] restraint check 2008/07/01
- From: Modeller Caretaker <>
[modeller_usage] GA341 assessment 2008/07/02
- From: Lella Sana <>
Re: [modeller_usage] GA341 assessment 2008/07/02
- From: Modeller Caretaker <>
[modeller_usage] symmetric hexamer 2008/07/16
- From:
[modeller_usage] naming chains in pdb 2008/07/16
- From: "Abdul Hameed, MohamedDiwanMo" <>
Re: [modeller_usage] symmetric hexamer 2008/07/16
- From: Modeller Caretaker <>
Re: [modeller_usage] naming chains in pdb 2008/07/16
- From: Modeller Caretaker <>
[modeller_usage] a question on MODELLER usage 2008/07/17
- From: "Ivan Anishchenko" <>
Re: [modeller_usage] a question on MODELLER usage 2008/07/17
- From: Modeller Caretaker <>
[modeller_usage] Installation on Debian Linux 2008/07/22
- From: "Francesco Pietra" <>
[modeller_usage] Fwd: Installation on Debian Linux 2008/07/22
- From: "刘君" <>
[modeller_usage] Fwd: a question on MODELLER usage 2008/07/22
- From: "刘君" <>
[modeller_usage] Fwd: The results of your email commands 2008/07/22
- From: "刘君" <>
[modeller_usage] doutbs about file 2008/07/22
- From: Amanda Moraes <>
Re: [modeller_usage] doutbs about file 2008/07/22
- From: Modeller Caretaker <>
[modeller_usage] another doutbs about file 2008/07/24
- From: Amanda Moraes <>
Re: [modeller_usage] another doutbs about file 2008/07/24
- From: Modeller Caretaker <>
[modeller_usage] Mismatch alignment-pdb 2008/07/24
- From: "Francesco Pietra" <>
Re: [modeller_usage] Mismatch alignment-pdb 2008/07/24
- From: "Francesco Pietra" <>
Re: [modeller_usage] Mismatch alignment-pdb 2008/07/24
- From: "Francesco Pietra" <>
Re: [modeller_usage] Mismatch alignment-pdb 2008/07/24
- From: Modeller Caretaker <>
[modeller_usage] Editing pdb file for a multimer 2008/07/26
- From: "Francesco Pietra" <>
[modeller_usage] Appending model pdb files 2008/07/27
- From: "Francesco Pietra" <>
[modeller_usage] working & accuracy of modeller 2008/07/27
- From:
Re: [modeller_usage] working & accuracy of modeller 2008/07/28
- From: Modeller Caretaker <>
[modeller_usage] Oligomer Modelling 2008/07/29
- From: Manjunatha Karpenahalli <>
Re: [modeller_usage] Oligomer Modelling 2008/07/29
- From: Modeller Caretaker <>
Re: [modeller_usage] Editing pdb file for a multimer 2008/07/29
- From: Modeller Caretaker <>
Re: [modeller_usage] Appending model pdb files 2008/07/29
- From: Modeller Caretaker <>
[modeller_usage] Simple modeling with ligand 2008/07/30
- From: "Francesco Pietra" <>
Re: [modeller_usage] Simple modeling with ligand 2008/07/30
- From: Modeller Caretaker <>
[modeller_usage] build_profile.log? 2008/07/31
- From: Μαρία Τζιαστούδη <>
Re: [modeller_usage] build_profile.log? 2008/07/31
- From: Modeller Caretaker <>
[modeller_usage] Oligomer Modelling 2008/07/31
- From: Manjunatha Karpenahalli <>
Re: [modeller_usage] Oligomer Modelling 2008/07/31
- From: Modeller Caretaker <>
[modeller_usage] new to modeller 2008/08/02
- From: Chinwe Ekenna <>
Re: [modeller_usage] new to modeller 2008/08/02
- From: Modeller Caretaker <>
[modeller_usage] modeling an oligomer 2008/08/06
- From: Douglas Kojetin <>
Re: [modeller_usage] modeling an oligomer 2008/08/07
- From: Douglas Kojetin <>
[modeller_usage] GPCR modeling 2008/08/07
- From: "Sharangdhar S. Phatak" <>
Re: [modeller_usage] modeling an oligomer 2008/08/07
- From: Modeller Caretaker <>
[modeller_usage] side chains turned inside out 2008/08/08
- From: "Josmar R. da Rocha" <>
[modeller_usage] question about a mix model 2008/08/08
- From: Jesica MLM <>
Re: [modeller_usage] question about a mix model 2008/08/08
- From: Modeller Caretaker <>
Re: [modeller_usage] side chains turned inside out 2008/08/08
- From: Modeller Caretaker <>
[modeller_usage] using modeller to refine a docking conformation 2008/08/14
- From: "Jake Gunn-Glanville" <>
Re: [modeller_usage] using modeller to refine a docking conformation 2008/08/14
- From: Modeller Caretaker <>
[modeller_usage] problem with model-multiple-hetero.py 2008/08/15
- From: "sanjay singh" <>
Re: [modeller_usage] problem with model-multiple-hetero.py 2008/08/15
- From: Modeller Caretaker <>
[modeller_usage] problem with ligand modelling 2008/08/18
- From: "sanjay singh" <>
[modeller_usage] Rino Ragno è fuori ufficio/ is out of office 2008/08/18
- From:
[modeller_usage] Rino Ragno è fuori ufficio/ is out of office 2008/08/18
- From:
Re: [modeller_usage] problem with ligand modelling 2008/08/18
- From: Modeller Caretaker <>
Re: [modeller_usage] modeller_usage Digest, Vol 7, Issue 54 2008/08/19
- From: "sanjay singh" <>
Re: [modeller_usage] modeller_usage Digest, Vol 7, Issue 54 2008/08/19
- From: Modeller Caretaker <>
Re: [modeller_usage] modeller_usage Digest, Vol 7, Issue 56 2008/08/20
- From: "salam pradeep" <>
Re: [modeller_usage] modeller_usage Digest, Vol 7, Issue 56 2008/08/20
- From: Modeller Caretaker <>
[modeller_usage] Chaining models 2008/08/21
- From: Stéphane Téletchéa <>
Re: [modeller_usage] Chaining models 2008/08/21
- From: Modeller Caretaker <>
[modeller_usage] protein-dna complex modeling 2008/08/21
- From: "prasun kumar" <>
Re: [modeller_usage] protein-dna complex modeling 2008/08/21
- From: Modeller Caretaker <>
Re: [modeller_usage] modeller_usage Digest, Vol 7, Issue 58 2008/08/28
- From: "salam pradeep" <>
[modeller_usage] 'import site' failed; use -v for traceback 2008/09/02
- From: DimitryASuplatov <>
Re: [modeller_usage] 'import site' failed; use -v for traceback 2008/09/02
- From: Modeller Caretaker <>
[modeller_usage] objective function 2008/09/03
- From: Amanda Moraes <>
[modeller_usage] how to fix some residues not lying in allowed regions of Ramachandran plot 2008/09/03
- From:
Re: [modeller_usage] how to fix some residues not lying in allowed regions of Ramachandran plot 2008/09/03
- From:
[modeller_usage] (My) problems with BLK 2008/09/06
- From: "Francesco Pietra" <>
[modeller_usage] Fwd: (My) problems with BLK 2008/09/07
- From: "Francesco Pietra" <>
[modeller_usage] Fwd: (My) problems with BLK 2008/09/07
- From: "Francesco Pietra" <>
Re: [modeller_usage] how to fix some residues not lying in allowed regions of Ramachandran plot 2008/09/07
- From: Frederico Arnoldi <>
Re: [modeller_usage] (My) problems with BLK 2008/09/08
- From: Modeller Caretaker <>
[modeller_usage] CHARMM atom type is not recognized (not in RADII_LIB): 15.999 2008/09/08
- From: "Wang Yanli" <>
Re: [modeller_usage] CHARMM atom type is not recognized (not in RADII_LIB): 15.999 2008/09/09
- From: Modeller Caretaker <>
[modeller_usage] from ylwang: loop conformation sampling 2008/09/10
- From: "Wang Yanli" <>
[modeller_usage] How to introduce a covalent bond in a model? 2008/09/19
- From: DimitryASuplatov <>
[modeller_usage] how to constrain automodel to remain closer to the template 2008/09/19
- From: "Jake Gunn-Glanville" <>
Re: [modeller_usage] How to introduce a covalent bond in a model? 2008/09/19
- From: Modeller Caretaker <>
Re: [modeller_usage] how to constrain automodel to remain closer to the template 2008/09/19
- From: Modeller Caretaker <>
Re: [modeller_usage] from ylwang: loop conformation sampling 2008/09/19
- From: Modeller Caretaker <>
[modeller_usage] clockwise pentamer to anticlockwise model 2008/09/19
- From:
[modeller_usage] W> MODEL atom not classified: GLY:OXT GLY 2008/09/24
- From: "Joaquim Rui Rodrigues" <>
Re: [modeller_usage] W> MODEL atom not classified: GLY:OXT GLY 2008/09/24
- From: Modeller Caretaker <>
[modeller_usage] Cluster PDBs 2008/09/27
- From: "Wang Yanli" <>
Re: [modeller_usage] Need help in not modeling the propep feature in final model 2008/09/29
- From: Modeller Caretaker <>
Re: [modeller_usage] Cluster PDBs 2008/09/29
- From: Modeller Caretaker <>
Re: [modeller_usage] clockwise pentamer to anticlockwise model 2008/09/29
- From: Modeller Caretaker <>
[modeller_usage] Modelling an oligomer 2008/10/04
- From: Lucas Bleicher <>
[modeller_usage] PCA problem 2008/10/06
- From: Julien Pele <>
[modeller_usage] Is there anything wrong with my configuration file?My models look so strange 2008/10/06
- From: "wayj86 wayj86" <>
[modeller_usage] radii.lib 2008/10/09
- From: "Joaquim Rui Rodrigues" <>
Re: [modeller_usage] radii.lib 2008/10/09
- From: Modeller Caretaker <>
Re: [modeller_usage] Is there anything wrong with my configuration file?My models look so strange 2008/10/09
- From: Modeller Caretaker <>
[modeller_usage] Using of a template with the coordinates of the Calpha atoms only. 2008/10/14
- From: Jean-Paul Becker <>
Re: [modeller_usage] Using of a template with the coordinates of the Calpha atoms only. 2008/10/16
- From: Modeller Caretaker <>
[modeller_usage] Modeller 9v5 release 2008/10/16
- From: Modeller Caretaker <>
Re: [modeller_usage] Modelling an oligomer 2008/10/17
- From: Modeller Caretaker <>
[modeller_usage] keeping original residue numbers in final model 2008/10/22
- From: "Mauricio Carrillo Tripp" <>
[modeller_usage] adding two proteins 2008/10/24
- From: "prasun kumar" <>
[modeller_usage] dopehr_loopmodel crashed 2008/10/24
- From: "Mauricio Carrillo Tripp" <>
[modeller_usage] automodel vs loopmodel 2008/10/24
- From: "Mauricio Carrillo Tripp" <>
[modeller_usage] adding two residues of different peptides 2008/10/25
- From: "prasun kumar" <>
[modeller_usage] to build ions 2008/10/28
- From: vidhya ganesh <>
[modeller_usage] How to change directory path for atom files 2008/10/28
- From: "khuram sb" <>
[modeller_usage] modeling of phosphorylated polypeptide 2008/10/29
- From: Xiao-Ping Zhang <>
[modeller_usage] interpolating missing residues 2008/10/30
- From: BIN ZHANG <>
Re: [modeller_usage] modeling of phosphorylated polypeptide 2008/10/31
- From: Xiao-Ping Zhang <>
Re: [modeller_usage] modeling of phosphorylated polypeptide 2008/10/31
- From: "Dibyabhaba Pradhan" <>
[modeller_usage] mutate script from modeller site 2008/11/01
- From: DimitryASuplatov <>
[modeller_usage] Heme 2008/11/03
- From: Bo Yang <>
Re: [modeller_usage] Heme 2008/11/04
- From: Bo Yang <>
Re: [modeller_usage] Heme 2008/11/04
- From: Robert Campbell <>
[modeller_usage] Building a tetramer 2008/11/10
- From: Nicky Thrupp <>
[modeller_usage] Help 2008/11/10
- From: nagaraju ngaraju <>
[modeller_usage] template alignment challenge 2008/11/11
- From: Chinwe Ekenna <>
Re: [modeller_usage] Help 2008/11/11
- From: Modeller Caretaker <>
Re: [modeller_usage] Building a tetramer 2008/11/11
- From: Modeller Caretaker <>
Re: [modeller_usage] How to change directory path for atom files 2008/11/11
- From: Modeller Caretaker <>
Re: [modeller_usage] mutate script from modeller site 2008/11/11
- From: Modeller Caretaker <>
Re: [modeller_usage] template alignment challenge 2008/11/11
- From: Modeller Caretaker <>
Re: [modeller_usage] to build ions 2008/11/11
- From: Modeller Caretaker <>
Re: [modeller_usage] keeping original residue numbers in final model 2008/11/11
- From: Modeller Caretaker <>
Re: [modeller_usage] adding two proteins 2008/11/11
- From: Modeller Caretaker <>
[modeller_usage] Error massage 2008/11/11
- From: nagaraju ngaraju <>
Re: [modeller_usage] Error massage 2008/11/11
- From: Modeller Caretaker <>
Re: [modeller_usage] adding two residues of different peptides 2008/11/11
- From: Modeller Caretaker <>
Re: [modeller_usage] automodel vs loopmodel 2008/11/11
- From: Modeller Caretaker <>
Re: [modeller_usage] interpolating missing residues 2008/11/11
- From: Modeller Caretaker <>
Re: [modeller_usage] modeling of phosphorylated polypeptide 2008/11/11
- From: Modeller Caretaker <>
Re: [modeller_usage] modeling of phosphorylated polypeptide 2008/11/11
- From: Modeller Caretaker <>
[modeller_usage] How to install pylab in modeller? 2008/11/12
- From: vidhya ganesh <>
Re: [modeller_usage] modeller_why ther is know gui. 2008/11/12
- From: Jayashankar <>
Re: [modeller_usage] modeller_why ther is know gui. 2008/11/12
- From: Modeller Caretaker <>
Re: [modeller_usage] How to install pylab in modeller? 2008/11/12
- From: Modeller Caretaker <>
Re: [modeller_usage] Heme 2008/11/12
- From: Modeller Caretaker <>
[modeller_usage] model a peptide without moving a part of it 2008/11/14
- From: "Omar Piña" <>
Re: [modeller_usage] model a peptide without moving a part of it 2008/11/14
- From: Modeller Caretaker <>
[modeller_usage] Visuvalise 2008/11/14
- From: nagaraju ngaraju <>
Re: [modeller_usage] Visuvalise 2008/11/17
- From: Modeller Caretaker <>
Re: [modeller_usage] dopehr_loopmodel crashed 2008/11/17
- From: Modeller Caretaker <>
Re: [modeller_usage] dopehr_loopmodel crashed 2008/11/17
- From: "Mauricio Carrillo Tripp" <>
Re: [modeller_usage] dopehr_loopmodel crashed 2008/11/17
- From: Modeller Caretaker <>
[modeller_usage] Loop model refinement level 2008/11/17
- From: "Mauricio Carrillo Tripp" <>
Re: [modeller_usage] Loop model refinement level 2008/11/17
- From: Modeller Caretaker <>
[modeller_usage] normalized DOPE - expected values vs quality of template? 2008/11/20
- From: Daniel Rigden <>
[modeller_usage] question for a (putative?) disulfide bridge 2008/11/20
- From: Anna Marabotti <>
Re: [modeller_usage] question for a (putative?) disulfide bridge 2008/11/20
- From: Modeller Caretaker <>
[modeller_usage] R: question for a (putative?) disulfide bridge 2008/11/21
- From: Anna Marabotti <>
Re: [modeller_usage] R: question for a (putative?) disulfide bridge 2008/11/21
- From: Modeller Caretaker <>
[modeller_usage] Transfer_xyz or other methods? 2008/11/23
- From:
[modeller_usage] how to build a model from a template with only CA atoms? 2008/11/25
- From: "Lixia Jin Day" <>
Re: [modeller_usage] how to build a model from a template with only CA atoms? 2008/11/25
- From: Modeller Caretaker <>
[modeller_usage] R: R: question for a (putative?) disulfide bridge 2008/11/26
- From: Anna Marabotti <>
[modeller_usage] dope batch processing 2008/11/26
- From: "jinlian" <>
[modeller_usage] Residues in disallowed region 2008/11/27
- From: Bo Yang <>
[modeller_usage] dope batch processing 2008/11/28
- From: "Mauricio Carrillo Tripp" <>
Re: [modeller_usage] dope batch processing 2008/12/01
- From: Modeller Caretaker <>
Re: [modeller_usage] Transfer_xyz or other methods? 2008/12/01
- From: Modeller Caretaker <>
Re: [modeller_usage] Residues in disallowed region 2008/12/01
- From: Modeller Caretaker <>
[modeller_usage] manual restaints in muultiple template modeling? 2008/12/01
- From:
[modeller_usage] Atom has GB/SA radius 0.0000. 2008/12/02
- From: "Joaquim Rui Rodrigues" <>
Re: [modeller_usage] Transfer_xyz or other methods? 2008/12/02
- From: Modeller Caretaker <>
Re: [modeller_usage] Atom has GB/SA radius 0.0000. 2008/12/02
- From: Modeller Caretaker <>
Re: [modeller_usage] manual restaints in muultiple template modeling? 2008/12/02
- From: Modeller Caretaker <>
Re: [modeller_usage] R: R: question for a (putative?) disulfide bridge 2008/12/02
- From: Modeller Caretaker <>
[modeller_usage] import errors 2008/12/04
- From: "Mauricio Carrillo Tripp" <>
Re: [modeller_usage] import errors 2008/12/04
- From: Modeller Caretaker <>
Re: [modeller_usage] import errors 2008/12/04
- From: "Mauricio Carrillo Tripp" <>
Re: [modeller_usage] import errors 2008/12/04
- From: Modeller Caretaker <>
Re: [modeller_usage] import errors 2008/12/05
- From: "Mauricio Carrillo Tripp" <>
Re: [modeller_usage] import errors 2008/12/05
- From: Modeller Caretaker <>
Re: [modeller_usage] import errors 2008/12/05
- From: "Mauricio Carrillo Tripp" <>
Re: [modeller_usage] parallel modeller 2008/12/07
- From: "Mauricio Carrillo Tripp" <>
Re: [modeller_usage] import errors 2008/12/08
- From: Modeller Caretaker <>
Re: [modeller_usage] parallel modeller 2008/12/08
- From: "Mauricio Carrillo Tripp" <>
Re: [modeller_usage] parallel modeller 2008/12/08
- From: Modeller Caretaker <>
Re: [modeller_usage] import errors 2008/12/08
- From: "Mauricio Carrillo Tripp" <>
[modeller_usage] Multicore Jobs on QB3 Cluster Nodes 2008/12/08
- From: Albion Baucom <>
Re: [modeller_usage] Multicore Jobs on QB3 Cluster Nodes 2008/12/08
- From: Modeller Caretaker <>
Re: [modeller_usage] import errors 2008/12/09
- From: Modeller Caretaker <>
[modeller_usage] POSITION IONS IN MODELS 2008/12/11
- From: Lella Sana <>
Re: [modeller_usage] POSITION IONS IN MODELS 2008/12/11
- From: Modeller Caretaker <>

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