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[modeller_usage] Re: Missing Residues at the Start, As Well As in the Middle, of the Sequence of a Chain
- To:
- Subject: [modeller_usage] Re: Missing Residues at the Start, As Well As in the Middle, of the Sequence of a Chain
- From: Modeller Caretaker <>
- Date: Wed, 29 May 2024 00:00:41 -0700
On 5/28/24 11:48 PM, Siddhartha Barua via modeller_usage wrote:
> *KeyError: 'No such residue: 431:B'*
Residues in the model are by default numbered starting at 1 and the
chains labeled alphabetically starting at A. Since you only have a
single chain, it will be labeled A, not B.
See https://salilab.org/modeller/10.5/manual/node23.html
If you want to number the residues differently, see
https://salilab.org/modeller/10.5/manual/node30.html
It looks like you are mistakenly using the template residue numbering here.
Ben Webb, Modeller Caretaker
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