[modeller_usage] Fwd: Error in modeller 10.5

[Victor Eduardo Rojas Pérez <>]

---------- Forwarded message ---------
De: Victor Eduardo Rojas Pérez <>
Date: mar, 3 sept 2024 a las 13:11
Subject: Error in modeller 10.5
To: Modeller Caretaker <>, <
>


Dear All,

Along with greeting them cordially.
I have the following error using modeller 10.5. in linux operating system.
I have added the restyp RTN, retinal with % symbol in the restyp.lib file
in the modlib folder but I still have this error.
What else could I do to solve this error.

Thank you.

mod10.5 align1.py
Could not find platform independent libraries <prefix>
Could not find platform dependent libraries <exec_prefix>
Consider setting $PYTHONHOME to <prefix>[:<exec_prefix>]
'import site' failed; use -v for traceback
Traceback (most recent call last):
  File "align1.py", line 56, in ?
    a.make()  # do homology modeling
  File "/usr/lib/modeller10.5/modlib/modeller/automodel/automodel.py", line
141, in make
    self.homcsr(exit_stage)
  File "/usr/lib/modeller10.5/modlib/modeller/automodel/automodel.py", line
611, in homcsr
    aln = self.read_alignment()
  File "/usr/lib/modeller10.5/modlib/modeller/automodel/automodel.py", line
572, in read_alignment
    aln.append(file=self.alnfile, align_codes=codes)
  File "/usr/lib/modeller10.5/modlib/modeller/alignment.py", line 82, in
append
    allow_alternates)
_modeller.ModellerError: read_al_375E> Unknown residue
type,position,sequence:  %      334        1


-- 
*   Víctor E. Rojas Pérez, Msc.*
*Estudiante Doctorado en Biotecnología Traslacional *
* Universidad Católica del Maule *
*Facultad de Ciencias Agrarias y Forestales*
*e-mail:  <>*


-- 
*   Víctor E. Rojas Pérez, Msc.*
*Estudiante Doctorado en Biotecnología Traslacional *
* Universidad Católica del Maule *
*Facultad de Ciencias Agrarias y Forestales*
*e-mail:  <>*

---------- Forwarded message ---------
De: Victor Eduardo Rojas Pérez <">>
Date: mar, 3 sept 2024 a las 13:11
Subject: Error in modeller 10.5
To: Modeller Caretaker <">>, <">>

Dear All,

Along with greeting them cordially.
I have the following error using modeller 10.5. in linux operating system. I have added the restyp RTN, retinal with % symbol in the restyp.lib file in the modlib folder but I still have this error.

What else could I do to solve this error.

Thank you.

mod10.5 align1.py

Could not find platform independent libraries <prefix>
Could not find platform dependent libraries <exec_prefix>
Consider setting $PYTHONHOME to <prefix>[:<exec_prefix>]
'import site' failed; use -v for traceback
Traceback (most recent call last):
  File "align1.py", line 56, in ?
    a.make()  # do homology modeling
  File "/usr/lib/modeller10.5/modlib/modeller/automodel/automodel.py", line 141, in make
    self.homcsr(exit_stage)
  File "/usr/lib/modeller10.5/modlib/modeller/automodel/automodel.py", line 611, in homcsr
    aln = self.read_alignment()
  File "/usr/lib/modeller10.5/modlib/modeller/automodel/automodel.py", line 572, in read_alignment
    aln.append(file=self.alnfile, align_codes=codes)
  File "/usr/lib/modeller10.5/modlib/modeller/alignment.py", line 82, in append
    allow_alternates)
_modeller.ModellerError: read_al_375E> Unknown residue type,position,sequence:  %      334        1


--

   Víctor E. Rojas Pérez, Msc.

Estudiante Doctorado en Biotecnología Traslacional 

 Universidad Católica del Maule 

Facultad de Ciencias Agrarias y Forestales

e-mail: " target="_blank">

--

   Víctor E. Rojas Pérez, Msc.

Estudiante Doctorado en Biotecnología Traslacional 

 Universidad Católica del Maule 

Facultad de Ciencias Agrarias y Forestales

e-mail: " target="_blank">