Modeller_Usage Mailing List (by thread)

• Date Index

• [modeller_usage] Modeller 10.5 release, Modeller Caretaker
• [modeller_usage] I don't want to use one region of a *target* for construction of my model., hmad3
  • [modeller_usage] Re: I don't want to use one region of a *target* for construction of my model., hmad3
  • [modeller_usage] Re: I don't want to use one region of a *target* for construction of my model., Modeller Caretaker
    • [modeller_usage] Re: I don't want to use one region of a *target* for construction of my model., hmad3
      • [modeller_usage] Re: I don't want to use one region of a *target* for construction of my model., Modeller Caretaker
      • [modeller_usage] Re: I don't want to use one region of a *target* for construction of my model., hmad3
• [modeller_usage] Error identifying new atomtypes in $RADII_LIB while adding new residue into modeller topology library, Neeraj Kumar T .
  • [modeller_usage] Re: Error identifying new atomtypes in $RADII_LIB while adding new residue into modeller topology library, Modeller Caretaker
    • [modeller_usage] Re: Error identifying new atomtypes in $RADII_LIB while adding new residue into modeller topology library, Neeraj Kumar T .
• [modeller_usage] Alignment to use when I am modelling a heteromer using a homer as template, hmad3
  • [modeller_usage] Re: Alignment to use when I am modelling a heteromer using a homer as template, Modeller Caretaker
• [modeller_usage] Modelling based on two templates - one oligomer and one monomer, hmad3
  • [modeller_usage] Re: Modelling based on two templates - one oligomer and one monomer, hmad3
    • [modeller_usage] Re: Modelling based on two templates - one oligomer and one monomer, Modeller Caretaker
      • [modeller_usage] Re: Modelling based on two templates - one oligomer and one monomer, hmad3
      • [modeller_usage] Re: Modelling based on two templates - one oligomer and one monomer, Modeller Caretaker
      • [modeller_usage] Re: Modelling based on two templates - one oligomer and one monomer, hmad3
      • [modeller_usage] Re: Modelling based on two templates - one oligomer and one monomer, hmad3
• [modeller_usage] Perodic boundary condition?, Qizan Chen
  • [modeller_usage] Re: Perodic boundary condition?, Modeller Caretaker
    • [modeller_usage] Re: Perodic boundary condition?, Qizan Chen
      • [modeller_usage] Re: Perodic boundary condition?, Modeller Caretaker
• [modeller_usage] About the error ( UnicodeDecodeError: 'utf-8' codec can't decode)form logger.py, c00jsw00
  • [modeller_usage] Re: About the error ( UnicodeDecodeError: 'utf-8' codec can't decode)form logger.py, Modeller Caretaker
    • [modeller_usage] Re: About the error ( UnicodeDecodeError: 'utf-8' codec can't decode)form logger.py, c00jsw00
    • [modeller_usage] Re: About the error ( UnicodeDecodeError: 'utf-8' codec can't decode)form logger.py, c00jsw00
      • [modeller_usage] Re: About the error ( UnicodeDecodeError: 'utf-8' codec can't decode)form logger.py, Modeller Caretaker
• [modeller_usage] my automodel run well serial, but molpdf is inmediatly exceeded when run in parallel, Mario Bianchet
  • [modeller_usage] Re: my automodel run well serial, but molpdf is inmediatly exceeded when run in parallel, Modeller Caretaker
• [modeller_usage] Re: About the error ( UnicodeDecodeError: 'utf-8' codec can't decode)form logger.py, Modeller Caretaker
• [modeller_usage] _modeller.ModellerError: getpdf__389E> MDT table range is too small. MDT should be derived with the full range of possible values for the independent variables., Rana Rehan Khalid
  • [modeller_usage] Re: _modeller.ModellerError: getpdf__389E> MDT table range is too small. MDT should be derived with the full range of possible values for the independent variables., Modeller Caretaker
• [modeller_usage] coarse parallelization, Jed Goldstone
  • [modeller_usage] Re: coarse parallelization, Modeller Caretaker
• [modeller_usage] Missing Residues at the Start, As Well As in the Middle, of the Sequence of a Chain, Siddhartha Barua
  • [modeller_usage] Re: Missing Residues at the Start, As Well As in the Middle, of the Sequence of a Chain, Joel Subach
    • [modeller_usage] Re: Missing Residues at the Start, As Well As in the Middle, of the Sequence of a Chain, Joel Subach
    • [modeller_usage] Re: Missing Residues at the Start, As Well As in the Middle, of the Sequence of a Chain, Siddhartha Barua
  • [modeller_usage] Re: Missing Residues at the Start, As Well As in the Middle, of the Sequence of a Chain, Modeller Caretaker
    • [modeller_usage] Re: Missing Residues at the Start, As Well As in the Middle, of the Sequence of a Chain, Siddhartha Barua
      • [modeller_usage] Re: Missing Residues at the Start, As Well As in the Middle, of the Sequence of a Chain, Joel Subach
• [modeller_usage] Building multi-chain models, alina . s123567
  • [modeller_usage] Re: Building multi-chain models, Modeller Caretaker
• [modeller_usage] Issues with incorporating ligands in multichain protein, Kyle- richard Dawson
  • [modeller_usage] Re: Issues with incorporating ligands in multichain protein, Modeller Caretaker
    • [modeller_usage] Re: Issues with incorporating ligands in multichain protein, Kyle- richard Dawson
      • [modeller_usage] Re: Issues with incorporating ligands in multichain protein, Modeller Caretaker
• [modeller_usage] help at second script, Junyi . FENG
  • [modeller_usage] Re: help at second script, Modeller Caretaker
  • <Possible follow-ups>
  • [modeller_usage] help at second script, FENG Junyi
• [modeller_usage] Using frcmod+off non-standard residue in modeller., Pedro Guillem
  • [modeller_usage] Re: Using frcmod+off non-standard residue in modeller., Modeller Caretaker
• [modeller_usage] Fwd: Error in modeller 10.5, Victor Eduardo Rojas Pérez
  • [modeller_usage] Re: Fwd: Error in modeller 10.5, Modeller Caretaker
• [modeller_usage] model different regions of a protein, José Xavier
  • [modeller_usage] Re: model different regions of a protein, Modeller Caretaker
    • [modeller_usage] Re: model different regions of a protein, Joel Subach
      • [modeller_usage] Re: model different regions of a protein, José Xavier
      • [modeller_usage] Re: model different regions of a protein, Joel Subach
    • [modeller_usage] Assunto: Re: model different regions of a protein, José Xavier
• [modeller_usage] D-Ala, Xiaosa Wu
  • [modeller_usage] Re: D-Ala, Modeller Caretaker
• [modeller_usage] Average the models, Marco Sette
  • [modeller_usage] Re: Average the models, Modeller Caretaker
• [modeller_usage] Modeller 10.6 release, Modeller Caretaker
• [modeller_usage] Fwd: Average the models, Marco Sette
  • [modeller_usage] Re: Fwd: Average the models, Modeller Caretaker
• [modeller_usage] Missing residues modeling in Modeller, bbmpresi
  • [modeller_usage] Re: Missing residues modeling in Modeller, Modeller Caretaker
• [modeller_usage] Reconstruction of CA position only files with all-atom template, jingkaizeng
  • [modeller_usage] Re: Reconstruction of CA position only files with all-atom template, Modeller Caretaker