[modeller_usage] Re: model different regions of a protein

[José Xavier <jxln_karate AT yahoo.com.br>]

 Dear Joel, Thank you for your help 
It's a protein with 415 amino acids and 95 are missing


    Em terça-feira, 10 de setembro de 2024 às 04:55:25 BRT, Joel Subach <mjsubach AT alumni.ncsu.edu> escreveu:  
 
 Hi Jose, thank you for your inquiry and I can assist you in greater detail if I know how many residues in total you peptide/protein is, thanks:)
On Tue, Sep 10, 2024 at 9:14 AM Modeller Caretaker via modeller_usage <modeller_usage@listsrv.ucsf.edu> wrote:

On 9/9/24 4:52 PM, José Xavier via modeller_usage wrote:
> I'm new here.. so sorry if this is an already answered question.
> 
> I want to model a protein but the better template doesn't show ~50 
> aminoácids in its sequence. Is it possible to model the protein based on 
> this template and only the region of ~50 residues based on another 
> template?

Yes, this is certainly possible with a suitable alignment; see the FAQ:
https://salilab.org/modeller/FAQ.html#1

        Ben Webb, Modeller Caretaker
-- 
modeller-care@ucsf.edu             https://salilab.org/modeller/
Modeller mail list: https://salilab.org/mailman/listinfo/modeller_usage

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Dear Joel, 

Thank you for your help 

It's a protein with 415 amino acids and 95 are missing

Em terça-feira, 10 de setembro de 2024 às 04:55:25 BRT, Joel Subach <mjsubach AT alumni.ncsu.edu> escreveu:

Hi Jose, thank you for your inquiry and I can assist you in greater detail if I know how many residues in total you peptide/protein is, thanks:)

On Tue, Sep 10, 2024 at 9:14â?¯AM Modeller Caretaker via modeller_usage <modeller_usage@listsrv.ucsf.edu> wrote:

On 9/9/24 4:52 PM, José Xavier via modeller_usage wrote:
> I'm new here.. so sorry if this is an already answered question.
>
> I want to model a protein but the better template doesn't show ~50
> aminoácids in its sequence. Is it possible to model the protein based on
> this template and only the region of ~50 residues based on another
> template?

Yes, this is certainly possible with a suitable alignment; see the FAQ:
https://salilab.org/modeller/FAQ.html#1

        Ben Webb, Modeller Caretaker
--
modeller-care@ucsf.edu             https://salilab.org/modeller/
Modeller mail list: https://salilab.org/mailman/listinfo/modeller_usage

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