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Re: [modeller_usage] adding two residues of different peptides
- To: modeller_usage@listsrv.ucsf.edu
- Subject: Re: [modeller_usage] adding two residues of different peptides
- From: Modeller Caretaker <modeller-care@ucsf.edu>
- Date: Tue, 11 Nov 2008 20:30:08 -0800
prasun kumar wrote:
> There is a PATCH for adding sulfide bridge among two sulfur atom in a
> peptide.Can we use this concept for adding two residues of two different
> peptides at a certain angle...........
See my previous reply at
http://salilab.org/archives/modeller_usage/2008/msg00257.html regarding
suitable patching. If you wanted to fix some angle, you could add an
angle restraint or define the angle in the patch definition
(top_heav.lib) and set the mean value for the angle in the parameter
file (par.lib).
Ben Webb, Modeller Caretaker
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