Re: [modeller_usage] template alignment challenge

[Modeller Caretaker <modeller-care@ucsf.edu>]

Chinwe Ekenna wrote:
> pls  sir i wasn't able to download pdb locally so i did a blast and
> got my target structure and sequence ...right now i'm at a loss of
> how to get an alignment file as build _profile would not suffice for
> this... how do i create an alignment file for my input or how do i
> create a pir file from my template... thanks

You would have to manually create an alignment file (it's just a text
file) and put the sequence(s) from BLAST into it. It's pretty easy to do
this by hand.

	Ben Webb, Modeller Caretaker
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