Re: [modeller_usage] import errors

["Mauricio Carrillo Tripp" <>]

This must be a dumb error from my part, but I followed directions to run
the scripts and now I'm getting a different error on all scripts. Here's the 
output:

/modeller9v5/bin/modpy.sh python model-parallel.py
Traceback (most recent call last):
  File "model-parallel.py", line 2, in ?
    from modeller import *
  File "/usr/people/trippm/bin/modeller9v5/modlib/modeller/__init__.py", line 59, in ?
    import _modeller
ImportError: /usr/people/trippm/bin/modeller9v5/lib/x86_64-intel8/libmodeller.so.4: undefined symbol: __svml_cosf4


> python
Python 2.3.4 (#1, Oct 13 2006, 15:53:00)
[GCC 3.3.4 (pre 3.3.5 20040809)] on linux2

Same happens if I declare ENV Variables first:
 export -p PYTHONHOME=/usr/lib64/python2.3/
 export MODINSTALL9v5=/modeller9v5
 export EXECUTABLE_TYPE9v5=x86_64-intel8
 export -p LIBS_LIB9v5=${MODINSTALL9v5}/modlib/libs.lib
 export KEY_MODELLER9v5=****
 export -p PATH=${PATH}:${MODINSTALL9v5}/bin

On Thu, Dec 4, 2008 at 11:37 AM, Modeller Caretaker <">> wrote:

Mauricio Carrillo Tripp wrote:
> I've just installed Modeller 9v5. I ran the examples in the automodel
> directory. All of them finished fine with the exception of model-parallel.
> All of them output an "'import site' failed; use -v for traceback" message
> though.

See http://salilab.org/modeller/release.html#issues for your "import
site failed" warning.

model-parallel failed because it requires the Python standard library.

Both of these issues have the same solution - don't use the mod9v5
script to run Modeller, but use "python" directly instead. See the
install instructions at that URL for more information.

       Ben Webb, Modeller Caretaker
--
">             http://www.salilab.org/modeller/
Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage

-- 
         0     |  Mauricio Carrillo Tripp, PhD
      /         |     Department of Molecular Biology, TPC6
  0            |     The Scripps Research Institute
      \         |     10550 North Torrey Pines Road
         0     |     La Jolla, California 92037
      /         |     ">
  0            |  http://www.scripps.edu/~trippm

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