[modeller_usage] Re: to model heterodimer protein of mossing residue

[Modeller Caretaker <modeller-care@ucsf.edu>]

On 8/31/23 11:25 PM, Arun Dhanasekaran via modeller_usage wrote:
> My reference pdb contains two chains of different protein, one with 306 
> residues in which 39 residues are missing  and another with 271 residues 
> with 22 residues are missing

As others have said, adding missing residues for a multi-chain protein 
is exactly the same as for a single-chain protein, except that you need 
to add chain break characters ("/") between the chain sequences. 
Alternatively, add the missing residues for each chain individually and 
then combine the two models into one, e.g. with a package such as ChimeraX.

	Ben Webb, Modeller Caretaker
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