On 3/26/12 1:30 AM, vishal Nemaysh wrote:
Regarding this (3D structure prediction) problem sir i will try to find out some template for covering the whole query sequence during BLAST. but there is no any single template or multiple template are found to occupied this query. so sir plz suggest me some solution...
Modeller is a package for comparative modeling, so if you have no template, you are out of luck. You either need to try harder to find a template (BLAST is not that sensitive - you can try other methods that use profile or HMM information, for example) or settle for only modeling the part of the sequence for which a template is available.
Ben Webb, Modeller Caretaker
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