Re: [modeller_usage] Regarding protein 3D structure modeling

[Modeller Caretaker <modeller-care@ucsf.edu>]

On 3/23/12 10:57 PM, vishal Nemaysh wrote:
> i have an amino acid sequence and the length is (1106 amino acid). so
> plz tell me how can i model the complete 3D structure of this much
> lengthy sequence.

Modeller has no maximum length; modeling a large protein is exactly the 
same as modeling a small protein. You might have to tweak 
automodel.max_ca_ca_distance if the protein is especially large though:
http://salilab.org/archives/modeller_usage/2011/msg00268.html

	Ben Webb, Modeller Caretaker
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