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Re: [modeller_usage] B value

To: Sanger <>
Subject: Re: [modeller_usage] B value
From: Modeller Caretaker <>
Date: Thu, 28 Apr 2011 12:21:24 -0700
Cc:

On 4/28/11 3:01 AM, Sanger wrote:

I have some questions about the B value, generated from the Modeller
along with the homology model. I am not sure how the temperature factor
(Beta) is calculated (by MD simulation?).


It is simply the relative heavy violation of each residue:
http://salilab.org/modeller/9.9/manual/node103.html#SECTION001031400000000000000

	Ben Webb, Modeller Caretaker
--
             http://www.salilab.org/modeller/
Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage

References:
- [modeller_usage] B value
  - From: Sanger <>

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