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[modeller_usage] B value
- To: modeller_usage@listsrv.ucsf.edu
- Subject: [modeller_usage] B value
- From: Sanger <biosanger AT gmail.com>
- Date: Thu, 28 Apr 2011 06:01:48 -0400
Dear friends,
I have some questions about the B value, generated from the Modeller
along with the homology model. I am not sure
how the temperature factor (Beta) is calculated (by MD simulation?).
Since many homology
modeling program didn't supply the information of B value, or just used
it as a temporary space to fill up data, I am curious how serious the
Modeller deals with it? Is it a proper data to estimate the flexibility
of residues?
Any suggestions or comments are greatly appreicated.
Your sincerely,
Xinhao Ye
----------
PhD candidate
Department of Biological Systems Engineering,
Virginia Tech
Blacksburg, VA 24061
USA