Part of model-default.log file is as follows:
Read the alignment from file : alignment.ali
Total number of alignment positions: 610
# Code #_Res #_Segm PDB_code Name
-------------------------------------------------------------------------------
1 1g7s 594 1 1g7s Initiation factop
2 NIF 595 1 NIF
runcmd______> alignment.check ()
check_a_343_> >> BEGINNING OF COMMAND
openf5__224_> Open 11 OLD SEQUENTIAL 1g7s
rdpdb___303E> No atoms were read from the specified input PDB file,
since the
starting residue number and/or chain id in MODEL_SEGMENT (or
the alignment file header) was not found;
requested starting position: residue number " 1", chain " A"
rdabrk__288W> Protein not accepted: 1 1g7s
check_a_337E> Structure not read in (please consult the log file
for more details): 1 1g7s