sako biochem wrote:
your pdb file name that you write in your alignment file is not equal with your pdb file in atom file folder.On 22/11/06, *Dhananjay* < <">mailto:>> wrote:
...
_modeller.error: read_al_373E> Protein specified in ALIGN_CODES(i)
was not found in the alignment file; ALIGN_CODES( 1) = 1M1G
No, this means that the code specified in the Python script ('1M1G') is not in the alignment file. This may be because you mistyped the code of the protein, misunderstood the PIR file format, or mixed upper and lower case (Modeller is case sensitive). It hasn't got as far as trying to read the PDB file at this point.
Ben Webb, Modeller Caretaker
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