Hi, Jeffrey!
Jeffrey P. Jones wrote:
>
> I am wondering what the format is for input in the alignment file of two
> molecules say heme (h) and myristic acid (5) distinct from the protein
> of interest.
>
> My guess is:
>
> AATLCLL(protein sequence)GT/h/5*
Please read the corresponding example in FAQ in the manual, how to deal
with small molecules of non-aminoacid nature.
The format is oK, but you have to specify in some library file what h
and 5 is (Hem is probably present in the standard library).
Yours,
Azat.
>
> The order they appear in the pdb file is AA/heme/myristate.
>
> Is this the format? When I use it the myristic acid input is ignored.
>
> Jeff
>
> --
> Jeffrey P. Jones, Ph.D.
> Associate Professor of Pharmacology, Physiology
> Biochemistry and Biophysics
> (716)275-5371, http://cyp.medicine.rochester.edu/~jpj/jones_group.html
>
--
- Dr. Azat Badretdinov
- The Rockefeller Univ, Box 270
- 1230 York Ave, New York NY 10021, USA
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