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Problem including substrate and heme
- To: modeller_usage
- Subject: Problem including substrate and heme
- From: "Jeffrey P. Jones" <jpj AT cyp.medicine.rochester.edu>
- Date: Tue, 03 Feb 1998 08:18:03 -0500
- Organization: University of Rochester
- Reply-to: jpj AT cyp.medicine.rochester.edu
I am wondering what the format is for input in the alignment file of two
molecules say heme (h) and myristic acid (5) distinct from the protein
of interest.
My guess is:
AATLCLL(protein sequence)GT/h/5*
The order they appear in the pdb file is AA/heme/myristate.
Is this the format? When I use it the myristic acid input is ignored.
Jeff
--
Jeffrey P. Jones, Ph.D.
Associate Professor of Pharmacology, Physiology
Biochemistry and Biophysics
(716)275-5371, http://cyp.medicine.rochester.edu/~jpj/jones_group.html
jpj AT cyp.medicine.rochester.edu