1. Reviews in comparative modeling
- Annual Review Biophysics Biomolecular Structure, 2000
- Science, 2001
- Nature Genomics, 1999
2. Examples in comparative modeling with MODELLER
- Current Protocols in Bioinformatics, 2003
- Current Protocols in Protein Science, 2002
- Methods in Enzymology, 2001
- Protein Structure Prediction: Methods and Protocols, 2000
3. Theoretical papers of methods implemented in MODELLER
- MODELLER. Journal of Molecular Biology, 1993
- Loop modeling. Protein Science, 2000
- Intermediate Sequence Search. Protein Science, 2003
- MOULDER. Nucleic Acid Research, 2003
- SALIGN profile-profile alignments. Protein Science, 2004