next up previous contents index
Next: automodel.very_fast() request Up: automodel reference Previous: automodel.select_atoms() select   Contents   Index

automodel.auto_align() -- generate an automatic initial alignment

auto_align(matrix_file='family.mat', overhang=0, write_fit=False)
This generates an initial alignment between the templates and the target sequence. See section 2.2.13 for an example.



Ben Webb 2007-08-03