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READ_SCHEDULE -- read optimization schedule

FILE = <string:1> 'default' partial or complete filename
DIRECTORY = <string:1> '' directory list (e.g., 'dir1:dir2:dir3:./:/')
SCHEDULE_SCALE = <real:35> 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 factors for physical restraint types in scaling the schedule

Output:
N_SCHEDULE

Description:
This command reads a text file that contains an optimization schedule for the variable target function method.

Each line in the file contains in free format the parameters for a single step of the variable target function method. These parameters are: step index (not used by the program), optimization method, maximal difference in residue indices of atoms restrained by the selected restraints (PICK_RESTRAINTS and Section 2.5.3), and the scaling factors for all types of restraints. The smaller the scaling factor, the weaker the corresponding restraint.

See MAKE_SCHEDULE for explanation of SCHEDULE_SCALE.

This command also sets the TOP variable N_SCHEDULE to the total number of the variable target function steps that were read in.

Example: See MAKE_SCHEDULE command.


next up previous contents index
Next: WRITE_SCHEDULE write Up: Optimization of the model Previous: MAKE_SCHEDULE create   Contents   Index
Ben Webb 2004-10-04