saravanan wrote: > Thanks for the help to generate dope plot. > > Now, we generated dope plot for template and model individually. How to > compare dope plots of them in a single plot? You will only be able to do a qualitative comparison, since DOPE scores are not normalized. You will also have to correct for any gaps in the two sequences. Ben Webb, Modeller Caretaker -- modeller-care@salilab.org http://www.salilab.org/modeller/ Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage