Hello, Is it possible de use PSIPRED program on a sequence and then use the output file, directly in MODELLER for it to generate MODELS using psipred's predictions as constraints ? If not, how can i use secondary prediction as constraint in MODELLER ? Thanks in advance, Olivia Doppelt ___________________________________________________________________________ Découvrez une nouvelle façon d'obtenir des réponses à toutes vos questions ! Profitez des connaissances, des opinions et des expériences des internautes sur Yahoo! Questions/Réponses http://fr.answers.yahoo.com
doppelt olivia wrote: > Is it possible de use PSIPRED program on a sequence and then use the > output file, > directly in MODELLER for it to generate MODELS using psipred's predictions > as constraints ? Not directly - you would have to write a short Python script to parse the output from PSIPRED, or do it manually. > If not, how can i use secondary prediction as constraint in MODELLER ? See http://salilab.org/modeller/FAQ.html#12 Ben Webb, Modeller Caretaker -- modeller-care@salilab.org http://www.salilab.org/modeller/ Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage
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