Hello all,
When I try to model my protein-DNA complex, I get the error: _modeller.ModellerError: read_al_373E> Protein specified in ALIGN_CODES(i) was not found in the alignment file; ALIGN_CODES( 2) = 2AHN
But I see no mistake either in the alignment or the format. I've attached both the ALI file and model-ligand.py. Please help!!!
On 04/09/2012 04:51 AM, Sumedha Roy wrote: > When I try to model my protein-DNA complex, I get the error: > _modeller.ModellerError: read_al_373E> Protein specified in > ALIGN_CODES(i) was not found in the alignment file; ALIGN_CODES( > 2) = 2AHN > > But I see no mistake either in the alignment or the format. I've > attached both the ALI file and model-ligand.py. Please help!!!
Your alignment file is in incorrect format. Each sequence must start with a >P1; header. Your second sequence starts with >P2; instead.
Ben Webb, Modeller Caretaker
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Modeller Caretaker -
Sumedha Roy