how to extract the part of structure from a complex ?
Hi, everybody I have a question, how to extract a ligand-part fragment of protein (mainly is catalyzed domain) in PDB format? e.g. in advaced example(), how to get the 1emd_bs from 1emd.pdb? I tried to text editor to edit the part, but i failed. Thanks for any advise! YJ
On 5/10/10 6:54 PM, Yue wrote: > I have a question, how to extract a ligand-part fragment of protein > (mainly is catalyzed domain) in PDB format? e.g. in advaced example(), > how to get the 1emd_bs from 1emd.pdb? > I tried to text editor to edit the part, but i failed.
We made 1emd_bs from 1emd using a text editor. Just delete the residues (ATOM or HETATM records) you don't want. What went wrong when you tried?
Ben Webb, Modeller Caretaker
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Modeller Caretaker -
Yue