
Dear Modeller users! I want to model simple symmetric model of the TRP-repressor consist of 2 identical chains based on known PDB structure of that protein where some residues from N and C terms are absent in both monomers. Could you provide mewith some tutorial for such simple task ( as the input I'd like to define pdb consisting of the A and B chains as well as sequence of one monomer. As the output I'd like to obtain the same pdb with two chains included with the refined conformations of the N and C unstructured segments). Thanks for help James

On 4/13/13 1:04 AM, James Starlight wrote: > I want to model simple symmetric model of the TRP-repressor consist of > 2 identical chains based on known PDB structure of that protein where > some residues from N and C terms are absent in both monomers. This sounds very similar to the example in the manual: http://salilab.org/modeller/9.11/manual/node28.html Ben Webb, Modeller Caretaker -- modeller-care@salilab.org http://www.salilab.org/modeller/ Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage
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James Starlight
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Modeller Caretaker