29 Jan
2006
29 Jan
'06
11:14 p.m.
Dear all,
I made a model with modeller and used the function auto_align() to get an automatic alignment. Now my question is the following: How can I find out which matrix (BLOSOM 60,...) was used to build this alignment?
Sincerely, Diana Schulze
30 Jan
30 Jan
10:52 a.m.
Schulze, Diana wrote: > I made a model with modeller and used the function auto_align() to get > an automatic alignment. Now my question is the following: How can I find > out which matrix (BLOSOM 60,...) was used to build this alignment?
By default, if you don't set rr_file, the sequence alignments (align and malign) used by auto_align() use the AS1 matrix.
Ben Webb, Modeller Caretaker
--
modeller-care@salilab.org http://www.salilab.org/modeller/
Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage
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Schulze, Diana