Hi: I want to use MODELLER9v1 to model the protein 3D structure, it belongs to the GPCR family, I choose bovin rhodopsin as the template. I want to only use the transmember regions of the template, but i dont know how to restraints the template sequence.Or is there another method i can use, please? Thanks a lot!
jinlian05@lzu.cn wrote: > I want to use MODELLER9v1 to model the protein 3D structure, it belongs to the > GPCR family, I choose bovin rhodopsin as the template. I want to only use the > transmember regions of the template, but i dont know how to restraints the > template sequence.Or is there another method i can use, please?
If you want to use only part of a template sequence, simply align your model sequence only with that part of the template.
Ben Webb, Modeller Caretaker
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jinlian05＠lzu.cn -
Modeller Caretaker