Hello Benn, I am a regular user of MODELLER. I was using 6v2 before this but now I switched to 7v7. I got very strange errors, which I never got in 6v2. Could you please explain. I found some similar posts in concern to these, but no solutions. --------------log file output---------- assgn___547E> Incorrect element type for variable: OUTPUT_CONTROL Element, element type: 3 Command line: SET OUTPUT_CONTROL = 1 1 1 1 1 assgn___525E> Error in TOP variable assignment. assgn___547E> Incorrect element type for variable: LIBRARY_SCHEDULE Element, element type: 3 Command line: SET LIBRARY_SCHEDULE = 1 assgn___525E> Error in TOP variable assignment. assgn___547E> Incorrect element type for variable: DYNAMIC_COULOMB Element, element type: 3 Command line: SET DYNAMIC_COULOMB = ON assgn___525E> Error in TOP variable assignment. assgn___547E> Incorrect element type for variable: HETATM_IO Element, element type: 3 Command line: SET HETATM_IO = 'on' assgn___525E> Error in TOP variable assignment. assgn___544E> Variable name not recognized: ALNFILE Command line: SET ALNFILE = 'alignment.ali' assgn___525E> Error in TOP variable assignment. assgn___544E> Variable name not recognized: KNOWNS Command line: SET KNOWNS = 'hrc' assgn___525E> Error in TOP variable assignment. assgn___544E> Variable name not recognized: STARTING_MODEL Command line: SET STARTING_MODEL = 1 assgn___525E> Error in TOP variable assignment. assgn___544E> Variable name not recognized: ENDING_MODEL Command line: SET ENDING_MODEL = 5 assgn___525E> Error in TOP variable assignment. assgn___544E> Variable name not recognized: MD_LEVEL Command line: SET MD_LEVEL = 'refine_1' assgn___525E> Error in TOP variable assignment. compile_563E> Please correct the errors reported above and rerun MODELLER. recover____E> ERROR_STATUS >= STOP_ON_ERROR: 1 1 Dynamically allocated memory at finish [B,kB,MB]: 56755 55.425 0.054 Starting time : 2005/03/14 11:07:32.511 Closing time : 2005/03/14 11:07:33.531 Total CPU time [seconds] : 0.99 ---------------------------------------- While model-default.top in examples runs perfectly alright. What can be the problem? Please suggest. br, Vivek -- VIVEK SHARMA HBG BI "You must be the change you wish to see in the world." MKG
vivek sharma wrote: > I am a regular user of MODELLER. I was using 6v2 before this but now I > switched to 7v7. I got very strange errors, which I never got in 6v2. > Could you please explain. I found some similar posts in concern to these, > but no solutions. > > --------------log file output---------- > > assgn___547E> Incorrect element type for variable: OUTPUT_CONTROL > Element, element type: 3 > Command line: SET OUTPUT_CONTROL = 1 1 1 1 1 There is obviously nothing wrong with your Modeller installation, since as you say, model-default.top works OK. There must be something wrong with your input file, but it's difficult to tell what that might be without seeing it. Ben Webb, Modeller Caretaker -- modeller-care@salilab.org http://www.salilab.org/modeller/ Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage
Dear Benn, Actually, I also didnt understand the problem, I was using perfectly OK input file, I checked it very carefully, but it didnt worked. Well I dont have it any more. But to make it run, I used model-default.top and changed all values in this as I wanted and used it for my own work. It worked without all these strange errors. Although, problem is not solved. I will get back to you if similar problem arises. Best regards, Vivek On Mon, 14 Mar 2005, Modeller Caretaker wrote: > vivek sharma wrote: > > I am a regular user of MODELLER. I was using 6v2 before this but now I > > switched to 7v7. I got very strange errors, which I never got in 6v2. > > Could you please explain. I found some similar posts in concern to these, > > but no solutions. > > > > --------------log file output---------- > > > > assgn___547E> Incorrect element type for variable: OUTPUT_CONTROL > > Element, element type: 3 > > Command line: SET OUTPUT_CONTROL = 1 1 1 1 1 > > There is obviously nothing wrong with your Modeller installation, since > as you say, model-default.top works OK. There must be something wrong > with your input file, but it's difficult to tell what that might be > without seeing it. > > Ben Webb, Modeller Caretaker > -- > modeller-care@salilab.org http://www.salilab.org/modeller/ > Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage > VIVEK SHARMA HBG BI
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