I want to make homology modelling of TM domains without loops in GPCR. But I get error during calculatioons. What wrong I have done? Respectively yours, Andrew I use such alignment: >P1;1L9H X-ray:1L9H:37 : :307 : :rhodopsin:Bos Taurus: : FSMLAAYMFLLIMLGFPINF/YILLNLAVADLFMVFGGFTTT/NLEGFFATLGGEIALWSLVVL/AIMGVAFTWVMALACAAPPLV/FVIYMFVVHFIIPLIVIFFC/VTRMVIIMVIAFLICWLPYAG/FMTIPAFFAKTSAVYNPVIYI* >P1;1fdx sequence:fzd1:324 : :623 : :Frizzled:Homo Sapiens: : GIWSVLCCASTLFTVLTYLV/IIFLSGCYTAVAVAYIAGFLL/TILFMMLYFFSMASSIWWVIL/YFHLAAWAVPAIKTITILALG/FVLAPLFVYLFIGTSFLLAGF/IGVFSVLYTVPATIVIACYFY/VFMIKYLMTLIVGITSGFWIW *
drugdesign wrote: > I want to make homology modelling of TM domains without loops in GPCR. > But I get error during calculatioons. What wrong I have done? You will have to send your input files and the log file containing the error - otherwise there's no way we can tell what your problem is. Ben Webb, Modeller Caretaker -- modeller-care@salilab.org http://www.salilab.org/modeller/ Modeller mailing list: http://salilab.org/mailman/listinfo/modeller_usage
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