[modeller_usage] Re: Modelling based on two templates - one oligomer and one monomer

Dear Ben, Thank you very much. One last question (I'm pretty new to Modeller) about the .ali file and Python code:

* I presume that for the .ali file, the header for the AF sequences would be >P1;temp2 structureX:temp2::A::A::::

and what would the part of the Python code that looks like: a = automodel(env, alnfile = 'alignment.ali' , # alignment filename knowns = 'temp1', # codes of the templates sequence = 'target') # code of the target need to look like? Would there need to be a list/array for "knowns"?

With kind regards, Amanda