Re: [modeller_usage] forcing alignment of particular residues

gerald.quon@utoronto.ca wrote: > I'm wondering how to force the align2d procedure to align the sequences to the > structures, under the constraint that a particular residue be aligned in all > sequences. i.e. is there a better way than to split the alignment into two > alignment procedures?

You can do this with salign or align2d, using fix_offsets. See http://salilab.org/modeller/manual/node194.html#SECTION008921600000000000000 for an salign example.

Ben Webb, Modeller Caretaker