Re: [modeller_usage] Psipred output in MODELLER

doppelt olivia wrote: > Is it possible de use PSIPRED program on a sequence and then use the > output file, > directly in MODELLER for it to generate MODELS using psipred's predictions > as constraints ?

Not directly - you would have to write a short Python script to parse the output from PSIPRED, or do it manually.

> If not, how can i use secondary prediction as constraint in MODELLER ?

See http://salilab.org/modeller/FAQ.html#12

Ben Webb, Modeller Caretaker