Hello Gowtham, you may want to consult one of the many recent reviews from Sali or the following paper from Sanzhez and Sali http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt... Andras gowthaman ramasamy wrote: > > hello fellow modellers.... > im trying to automate modeller to model some 200 proteins. i could generate a > script which selects the the group of template. and my compare.top compares all > these templates and produces the output file called compare.log. > > BUT I DONT know what criteria i should use to select the best template out of the > bunch. i attached my > > compare.top > compare.log > files with this mail.(as compar.tar) ..can any one help me ......... what > information i should look in LOG file to select best template(s). if it is > dendrogram..... how to do it... > > many thanx in advance > gowtham > graduate student > ICGEB > New Delhi > INDIA > > ------------------------------------------------------------------------ > Name: compar.tar > compar.tar Type: Unix Tape Archive (application/x-tar) > Encoding: base64 -- , Andras Fiser, PhD # phone: (212) 327 7216 The Rockefeller University # fax: (212) 327 7540 Box 270, 1230 York Avenue # e-mail:fisera@rockefeller.edu New York, NY 10021-6399, USA # http://salilab.org/~andras