Re: [modeller_usage] Creating a threaded protein template?

On 8/25/18 10:13 AM, Ahmad Khalifa wrote: > I want to create a threaded template without building the nonaligned > region? is it possible using modeller?

Modeller doesn't create templates - it makes models using templates. If you mean you want to build a model of only the residues that are aligned to a template, then sure, just remove all unaligned residues from your target sequence.

Ben Webb, Modeller Caretaker