Hi,
I have just installed Modeller 6.0v1 on my P-III, Conectiva Linux
(RH-like), under /usr/local/bin/modeller6v1/
My .bashrc reads:
# .bashrc
# User specific aliases and functions
# Source global definitions
if [ -f /etc/bashrc ]; then
. /etc/bashrc
fi
### begin MODELLER6v1
######################################################
MODINSTALL6v1=/usr/local/bin/modeller6v1
EXECUTABLE_TYPE6v1=i386-absoft
LIBS_LIB6v1=$MODINSTALL6v1/modlib/libs.lib
KEY_MODELLER6v1=XXX
mod=mod6v1
export MODINSTALL6v1 EXECUTABLE_TYPE6v1 LIBS_LIB6v1 KEY_MODELLER6v1 mod
PATH=$PATH:$MODINSTALL6v1/bin
ulimit -S -s unlimited
### end MODELLER6v1
########################################################
Attempts to run Modeller:
1. When I try 'mod model-default'I get 'bash: mod: command not found'
2. When I try '/usr/local/bin/modeller6v1/bin/mod6v1 model-default'I get
'STOP'
3. When I try '/usr/local/bin/modeller6v1/bin/mod6v1_i386-absoft
model-default'
I get something more interesting:
MODELLER 6v1, 17 Jan 2002
PROTEIN STRUCTURE MODELLING BY SATISFACTION OF SPATIAL RESTRAINTS
Copyright(c) 1989-2002 Andrej Sali
All Rights Reserved
Written by A. Sali
with help from A. Fiser, R. Sanchez, M.A. Marti-Renom,
B. Jerkovic, A. Badretdinov, F. Melo,
J.P. Overington & E. Feyfant
Rockefeller University, New York, USA
Harvard University, Cambridge, USA
Imperial Cancer Research Fund, London, UK
Birkbeck College, University of London, London, UK
Kind, OS, HostName, Kernel, Processor: 4, Linux home.localdomain
2.2.17-14cl i686
Date and time of compilation : 01/24/2002 16:28:15
Job starting time (YY/MM/DD HH:MM:SS): 2002/02/27 16:50:50.084
fullfn__230E> File not found: model-default
Directories: :${MODINSTALL6v1}/bin/
Extensions : .top:
Prefixes : nothing, pdb
recover____E> ERROR_STATUS >= STOP_ON_ERROR: 1 1
Dynamically allocated memory at finish [B,kB,MB]:
2190959 2139.608 2.089
Starting time : 2002/02/27
16:50:50.084
Closing time : 2002/02/27
16:50:51.154
Total CPU time [seconds] : 1.03
STOP
I trust someone can help me.
Yours thankfully,
Ari M. Siqueira, PhD
Associate Professor of Biochemistry
ICB - UFMG
Brazil
