Hi list
I try a compilation of IMP svn 6742 on Macbook laptop OS X 10.6
* Fink 64 bits installed (in /sw) with packages :
cgal-4 fftw-3 boost1.35.python26 boost1.35.nopython gsl and graphviz
* Ann hand installed in /usr/local
* Modeller installed as most recent MAC dmg
And I have several problems :
1.) the compilation process fails on cgal polyhedron compilation
g++ -o modules/cgal/src/internal/polyhedrons.os -c -Os -fno-common -dynamic -I/BenInstalls/imp-install/imp-debug/include -I/opt/local/include -I/sw/include -Wall -Wno-deprecated -Woverloaded-virtual -g -fno-finite-math-only -ftrapping-math -fsignaling-nans -fno-float-store -frounding-math -fno-strict-aliasing -DCGAL_DISABLE_ROUNDING_MATH_CHECK -fvisibility=hidden -fPIC -DIMPCGAL_EXPORTS -DGCC_VISIBILITY -Ibuild/include -I/BenInstalls/imp/src/build/include -I/usr/local/include -I/sw/include -I/usr/local/ann/ann_1.1.2/include /BenInstalls/imp/src/modules/cgal/src/internal/polyhedrons.cpp
In file included from /sw/include/CGAL/Nef_3/SNC_items.h:26,
from /sw/include/CGAL/Nef_3/Default_items.h:21,
from /sw/include/CGAL/Nef_polyhedron_3.h:29,
from /BenInstalls/imp/src/modules/cgal/src/internal/polyhedrons.cpp:8:
/sw/include/CGAL/Nef_3/Halfedge.h: In member function 'typename Refs::Vector_3 CGAL::Halfedge_base<Refs>::vector() const':
/sw/include/CGAL/Nef_3/Halfedge.h:110: error: 'ORIGIN' is not a member of 'CGAL'
/usr/include/c++/4.2.1/bits/stl_function.h: In member function 'bool std::less<_Tp>::operator()(const _Tp&, const _Tp&) const
[..] CGAL awful template insult [..]
/BenInstalls/imp/src/modules/cgal/src/internal/polyhedrons.cpp:100: instantiated from here
/usr/include/c++/4.2.1/bits/stl_function.h:227: error: no match for 'operator<' in '__x < __y'
[..] a few lines with replacement propositions for this operator [..]
Enabled dependencies: python, ANN, NetCDF, FFTW3, GSL, CGAL, Boost.ProgramOptions
Disabled/unfound optional dependencies: Boost.FileSystem, ExampleLib, Bullet
Enabled modules: kernel, cgal, algebra, core, container, atom, display, domino, em, example, misc, saxs, helper, statistics, gsl, modeller, restrainer, domino2, benchmark
Disabled modules: em2d, multifit, bullet
Errors building:
modules/cgal/src/internal/polyhedrons.os
2.) I was then able to continue the compilation by disabling the cgal dependency (cgal="no" in the config.py). It then goes on quite a long time then crashes at link time on :
g++ -o applications/saxs/profile.o -c -Os -fno-common -dynamic -I/BenInstalls/imp-install/imp-debug/include -I/opt/local/include -I/sw/include -Wall -Wno-deprecated -Woverloaded-virtual -g -Ibuild/include -I/BenInstalls/imp/src/build/include -I/usr/local/include -I/sw/include -I/usr/local/ann/ann_1.1.2/include /BenInstalls/imp/src/applications/saxs/profile.cpp
g++ -o applications/saxs/foxs -g applications/saxs/profile.o applications/saxs/Gnuplot.o -Lbuild/lib -L/BenInstalls/imp/src/build/lib -L/usr/local/lib -L/sw/lib -L/usr/local/ann/ann_1.1.2/lib -L/BenInstalls/imp-install/imp-debug/lib -limp_saxs -limp_atom -limp_container -limp_core -limp_algebra -limp -lANN -lnetcdf_c++ -lboost_program_options
ld: warning: directory '/BenInstalls/imp/src/build/lib' following -L not found
ld: warning: directory '/BenInstalls/imp-install/imp-debug/lib' following -L not found
Undefined symbols:
"boost::program_options::options_description::options_description(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int)", referenced from:
_main in profile.o
ld: symbol(s) not found
collect2: ld returned 1 exit status
scons: *** [applications/saxs/foxs] Error 1
scons: building terminated because of errors.
Any hint appreciated.
--Ben Schwarz
