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Hi,
I have a couple of question regarding how to visualize detailed information about the final score of a model and the Metropolis criteria:
1. Is there a way to show/determine each particle contribution to the final score (i.e. is it possible to determine the amount of restraints fulfilled by each particle of the model)? 2. About the temperature in the Monte Carlo optimizer. The get_temperature() method returns the temperature set for the Metropolis criteria. Is there a way to show how the temperature decreases during the optimization protocol?
Thanks in advance! Davide
____________ *Davide Baù* Structural Genomics Unit Bioinformatics & Genomics Department, Prince Felipe Research Center Avda. Autopista del Saler, 16 , 46012 Valencia, Spain Tel: +34 96 328 96 80 (ext. 1021) Fax: +34 96 328 97 01 Email: *dbau@cipf.es* Web: *http://sgu.bioinfo.cipf.es/dbau*
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On Feb 18, 2009, at 7:32 AM, Davide Baú wrote:
> Hi, > > I have a couple of question regarding how to visualize detailed > information about the final score of a model and the Metropolis > criteria: > Is there a way to show/determine each particle contribution to the > final score (i.e. is it possible to determine the amount of > restraints fulfilled by each particle of the model)? Not currently. This would be a nice ability to have (although not entirely well defined) but I don't have any ideas for a good way to provide it. This might be a way to use the disabled bit on particles (disable all particles but the slice you are interested in). The disabled bit is currently a mess, so having a well defined use would be good. That would require a hour or so of going through existing restraints and making sure they skip disabled particles. It could be done.
> About the temperature in the Monte Carlo optimizer. The > get_temperature() method returns the temperature set for the > Metropolis criteria. Is there a way to show how the temperature > decreases during the optimization protocol? std::cout << mc->get_temperature(); :-)
The temperature only decreases if you change it, so you need to set up a look calling set_temperature and optimize.
participants (2)
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Daniel Russel
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Davide Baú