April 2013 - IMP-dev - salilab.org

Re: [IMP-dev] [imp] problem with euler angles (#303)
by Barak.raveh 06 May '13

06 May '13

Does anyone use Euler angles? The related functions don't work too well (numerical instability) so let us know if you need them / feel like fixing them / ok with getting rid of them / marking then as dangerous On Apr 24, 2013, at 2:53 PM, drussel <notifications(a)github.com> wrote: > Should probably just remove the functions. They are numerically unstable and no one has any interest in fixing them. > > — > Reply to this email directly or view it on GitHub.

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imp doc
by Yannick SPILL 30 Apr '13

30 Apr '13

Hi there Which part of the imp docs (doxygen+github) can we consider up-to-date? Which part is outdated, or refers to deprecated functionality? thanks Y

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IMP 2.0 release
by Daniel Russel 29 Apr '13

29 Apr '13

Shall we make the 2.0 release official by the end of today (from the current master)? Basically the thing left to do is to update the website. We can then have the 2.0.1 release next week or so. Make sense?

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Please make sure you clean up commits before pushing to github/develop
by Daniel Russel 22 Apr '13

22 Apr '13

Part of the point of git is that you can commit and share patches without pushing them to the main branch and so can make sure things are clean before you do. Specifically - make sure there are no commits adding README.md files to the root directory - make sure there are no "Merge " commits in the history. You can use git log to look for such commits and git rebase -i HEAD~some_number To edit the last some_number of branches (to delete them clean up the commit messages, merge branches).

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Shall we declare it a release?
by Daniel Russel 21 Apr '13

21 Apr '13

The only issue that is in the release milestone relates to the web pages. Say by 5pm?

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link on working with remote vs. local git repository
by Barak Raveh 19 Apr '13

19 Apr '13

the biggest conceptual difference between git and svn is that in git, your repository is local. So when you commit, your commit is private - nobody else knows about it. In order to synchronize with everybody else, you need to 'push' to the remote repository The following link gives a pretty good explanation about working with remote repositories: http://git-scm.com/book/en/Git-Branching-Remote-Branches -- Barak

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IMPORTANT - decide whether to work on master vs. develop IMP version
by Barak Raveh 19 Apr '13

19 Apr '13

Dear all (Max, Riccardo, Natalia - this might be particularly important for you) As we approach the next release, it is *critical* that each person in the group will make a clear personal decision whether they want to work in the "develop" branch or the "master" branch (= release version) of IMP. Note that this has nothing to do with whether you are considered an IMP developer or not, it is just a technical personal decision. The *develop* branch is where we work on developing the next release. In 6 months, this will be the next IMP. It is less stable (but should be much much more stable than it used to as the testing system improves more and more). It contains the newest IMP features and updates. Also, you enjoy the daily testing system, so you can be assured your code will be compatible with the next IMP release. The *master* branch is the release version - it means you will be frozen with a relatively stable version of IMP, with minor bug updates from time to time, but will not get new features. All your code changes will be kept for you, and will not be easily shared with all other developers. Also, you will not enjoy the daily testing system (so you won't know if your code is stable for the next release). Feel free to ask questions or give feedback, this decision is totally up to you. You can switch in the middle, but it might be a bit of a mess as the two branches will diverge over time.

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github documentation page
by Barak Raveh 19 Apr '13

19 Apr '13

Mainly to Yannick and Daniel - I added some description of the 'develop' vs. 'master' choice to https://github.com/salilab/imp/wiki/Getting-started-as-a-developer. I put the graph part only for 'develop' users, do you think that makes sense? Or should we say the graph is the way to go for both?

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git commit model addition
by Yannick SPILL 18 Apr '13

18 Apr '13

Hi there I've added something graphical to make things clearer to what Daniel has been writing in the wiki. For now, it's in a separate page https://github.com/salilab/imp/wiki/Y%27s-addition but I think it needs to be merged with these two pages https://github.com/salilab/imp/wiki/Getting-started-as-a-developer https://github.com/salilab/imp/wiki/A-proposed-commit-model-for-IMP attached, you will find the graph, which I didn't know how to include in github. comments welcome! Y

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No more commits to svn
by Daniel Russel 18 Apr '13

18 Apr '13

Just a reminder. Nothing more is being automatically synced from svn to git.

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