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[modeller_usage] restraint distance between template and model

Hi!

I asked MODELLER to create a protein model using two templates. I think, my
model is quite good, but I see a place to improve in relation to the
relative position between some helices.  In the template, the helices are
close to each other and have a shift in the z-coordinates, but it's not
appear in my model.

How can I apply a restraint between template and model, in order to have
the same relative position between the helices? I tried to draw a scheme
below, in order to be more clear about what I'm speaking:

Z-axis     Relative position that I have in model    Relative position that
I want and see in template
    ^                         H             H
                       H
    |                          H             H
                       H                 H
    |                          H             H
                       H                 H
    |                          H             H
                       H                 H

                                              H
Kind regards,
Fred


-- 
Frederico José de S. Pontes
PDRA at LICAMM
University of Leeds
Hi!

I asked MODELLER to create a protein model using two templates. I think, my model is quite good, but I see a place to improve in relation to the relative position between some helices.  In the template, the helices are close to each other and have a shift in the z-coordinates, but it's not appear in my model.  

How can I apply a restraint between template and model, in order to have the same relative position between the helices? I tried to draw a scheme below, in order to be more clear about what I'm speaking:

Z-axis     Relative position that I have in model    Relative position that I want and see in template
    ^                         H             H                                                     H
    |                          H             H                                                     H                 H
    |                          H             H                                                     H                 H
    |                          H             H                                                     H                 H
                                                                                                                          H
Kind regards,
Fred


--
Frederico José de S. Pontes
PDRA at LICAMM
University of Leeds