[modeller_usage] Re: (no subject)

[Modeller Caretaker <modeller-care@ucsf.edu>]

On 3/27/25 3:01 PM, Fred Pontes via modeller_usage wrote:
> I'm a beginner in using MODELLER and I need help to fix my files 
> in my modelling. I'm trying to build a homology model using two 
> templates. I'd like to select different regions of each template to 
> build my model.
...
> I replace the amino acid symbol for '-' when they are present in a 
> region that I don't want to use as a template.

You still have to include the full template sequence; you can't remove 
it and replace it with '-'. If you don't want to align it with the 
model, see https://salilab.org/modeller/FAQ.html#2

	Ben Webb, Modeller Caretaker
-- 
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