[modeller_usage] Re: to model heterodimer protein of mossing residue

[Joel Subach <mjsubach AT alumni.ncsu.edu>]

Hi Arun how many residues in each chain total
and how many residues are missing in each chain
that need to be modeled? Best, Joel 

On Thursday, August 31, 2023, Ajasja Ljubetič via modeller_usage <
modeller_usage@listsrv.ucsf.edu> wrote:

> I think the only trick is not forgetting the chain break in the ali file:
> https://salilab.org/modeller/manual/node29.html
>
> Best,
> Ajasja
>
> PS: It's a very broad question, so I can only give a broad reply.
>
> On Thu, 31 Aug 2023 at 09:12, Arun Dhanasekaran via modeller_usage <
> modeller_usage@listsrv.ucsf.edu> wrote:
>
>> i tried a build a homology model of a heterodimer protein,since it
>> contains missing residue i have to model that. But i am only familiar
>> with single chain homology modelling and fro multi chain i am getting many
>> errors like in greeting ali flie. and from tutorial also i am not getting
>> everything clearly. can i get a detailed explantiojn on multi chain
>> modelling
>>
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>> modeller_usage mailing list
>> modeller_usage@listsrv.ucsf.edu
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>
>


Hi Arun how many residues in each chain totalÂ

and how many residues are missing in each chain 

that need to be modeled? Best, Joel ð???

On Thursday, August 31, 2023, Ajasja LjubetiÄ? via modeller_usage <modeller_usage@listsrv.ucsf.edu> wrote:

I think the only trick is not forgetting the chain break in the ali file:

https://salilab.org/modeller/manual/node29.html

Best,

Ajasja

PS: It's a very broad question, so I can only give a broad reply.

On Thu, 31 Aug 2023 at 09:12, Arun Dhanasekaran via modeller_usage <modeller_usage@listsrv.ucsf.edu> wrote:

i tried a build a homology model of a heterodimer protein,since it contains missing residue i have to model that. But i am only familiar with single chain homology modelling and fro multi chain i am getting many errors like in greeting ali flie. and from tutorial also i am not getting everything clearly. can i get a detailed explantiojn on multi chain modelling

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