[modeller_usage] Re: Missing Residue Modeling for an Oligomer Inquiry
To:
Subject: [modeller_usage] Re: Missing Residue Modeling for an Oligomer Inquiry
From: Joel Subach <>
Date: Mon, 19 Sep 2022 19:34:12 +0200
Hi Ben thank you so much for your kind update:)
On Mon, Sep 19, 2022 at 7:28 PM Modeller Caretaker <
> wrote:
> On 9/19/22 9:29 AM, Joel Subach via modeller_usage wrote:
> > Is it possible to try and missing residue model the complete heptamer
> > regardless due to my generated heptame exhibiting an unsatisfactory
> > RMSD Value?
>
> Yes, I would try to model all 7 chains simultaneously in Modeller. Since
> the rest of the protein will be held fixed during the procedure, the
> final structure should have a low RMSD to the original PDB.
>
> Ben Webb, Modeller Caretaker
> --
> https://salilab.org/modeller/
> Modeller mail list: https://salilab.org/mailman/listinfo/modeller_usage
>
Hi Ben thank you so much for your kind update: ) ð??? On Mon, Sep 19, 2022 at 7: 28 PM Modeller Caretaker <modeller-care@ salilab. org> wrote: On 9/19/22 9: 29 AM, Joel Subach via modeller_usage wrote: > Is it possible to try and missing residue
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Hi Ben thank you so much for your kind update:)Â ð???
On Mon, Sep 19, 2022 at 7:28 PM Modeller Caretaker <">> wrote:
On 9/19/22 9:29 AM, Joel Subach via modeller_usage wrote:
> Is it possible to try and missing residue model the complete heptamer
> regardless due to my generated heptame exhibiting an unsatisfactory
> RMSD Value?
Yes, I would try to model all 7 chains simultaneously in Modeller. Since
the rest of the protein will be held fixed during the procedure, the
final structure should have a low RMSD to the original PDB.