[modeller_usage] Missing Residue Modeling for an Oligomer Inquiry

[Joel Subach <>]

Hello, I missing residue modeled a loop region of a monomer
from an oligomer heptamer and then oligomerized this new model
monomer via GalaxyWeb into a heptamer, however, the generated
heptamer´s RMSD to the PDB structure is a great 40 A.

My understanding is that my above methodology is how Modeller
would function best due to interfacing of multiple subunit problems
if I tried to missing residue model all seven loops with missing residues.
Is it possible to try and missing residue model the complete heptamer
regardless due to my generated heptame exhibiting an unsatisfactory
RMSD Value?

Thanks

Hello, I missing residue modeled a loop region of a monomer from an oligomer heptamer and then oligomerized this new model monomer via GalaxyWeb into a heptamer, however, the generated heptamer´s RMSD to the PDB structure is a great 40 A. ‍

ZjQcmQRYFpfptBannerStart

This Message Is From an External Sender

This message came from outside your organization.

 

ZjQcmQRYFpfptBannerEnd

Hello, I missing residue modeled a loop region of a monomer

from an oligomer heptamer and then oligomerized this new model

monomer via GalaxyWeb into a heptamer, however, the generated 

heptamer´s RMSD to the PDB structure is a great 40 A.

My understanding is that my above methodology is how Modeller

would function best due to interfacing of multiple subunit problems

if I tried to missing residue model all seven loops with missing residues.  

Is it possible to try and missing residue model the complete heptamer

regardless due to my generated heptame exhibiting an unsatisfactory

RMSD Value?

Thanks ð???