[modeller_usage] Loop Modeling Missing Residues in an Oligomer OPM FIle Inquiry?

[Joel Subach <>]

Hello for the above topic, it seems that an oligomer missing pivotal loop residues would be best membrane modeled via Charm Protein-Membrane Orientation 1. ) first loop modeling the missing residues from the PDB File via Modeller for just the

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Hello for the above topic,

it seems that an oligomer missing pivotal loop residues would be best membrane modeled via Charm Protein-Membrane Orientation

1.) first loop modeling the missing residues from the PDB File via Modeller for just the A-Chain
2.) then oligomerize this and reorient the new PDB Coordinate File with the newly modeled missing residues

or would Modeller be able to use just the A-Chain OPM Protein-Membrane coordinate files to model the missing loop residues?
(I ask since Modeller missing loop residue modeling would best function via a single A-chain but subsequently oligomerizing this seems
complicated with an OPN file containing lipid membrane coordinates.)

Thanks:)
Joel